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See other LMNTD2 CNV Assays ›
Gene Symbol
LMNTD2
Assay Reference Genome
Location

Chr.11:559691 on build GRCh38
Cytoband
11p15.5
Assay ID Hs04397175_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 256329

Gene Name:

 lamin tail domain containing 2

Gene Aliases:

 C11orf35

Location:

 Chr.11:554850-560780 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LMNTD2 NM_173573.2 NP_775844.2
XM_017017478.1 XP_016872967.1
BC039077.1 AAH39077.1
BX384085.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552854 Chr.11:511805 - 619789 on Build GRCh38 Loss MIR210 LOC143666 CDHR5 LOC101059906 LMNTD2 LRRC56 HRAS IRF7 MIR210HG RASSF7 PHRF1
dgv1523n54 Chr.11:557342 - 656940 on Build GRCh38 Gain DRD4 MIR210 LOC143666 SCT CDHR5 LMNTD2 IRF7 MIR210HG RASSF7 DEAF1 PHRF1
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss SIGIRR ANO9 LOC101059906 IFITM3 RNH1 LMNTD2 LRRC56 HRAS B4GALNT4 MIR210HG IFITM1 IFITM5 IFITM2 MIR210 LOC143666 CDHR5 PTDSS2 IRF7 PKP3 PGGHG RASSF7 PHRF1
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion MIR210 LOC143666 SCT CDHR5 LOC101059906 LMNTD2 LRRC56 HRAS IRF7 MIR210HG RASSF7 PHRF1
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss MUC6 SIGIRR SCT TALDO1 LOC101059906 LRRC56 HRAS RPLP2 MIR210HG PNPLA2 DEAF1 TOLLIP LOC101927503 DRD4 CHID1 SNORA52 MUC2 PDDC1 CDHR5 MIR6744 CRACR2B MUC5AC RASSF7 LOC171391 PIDD1 ANO9 PANO1 AP2A2 RNH1 LMNTD2 B4GALNT4 EPS8L2 TMEM80 MIR210 CEND1 LOC143666 SLC25A22 PTDSS2 CD151 IRF7 POLR2L PKP3 TSPAN4 MUC5B PHRF1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss MUC6 SIGIRR SCT TALDO1 LOC101059906 LRRC56 HRAS RPLP2 MIR210HG PNPLA2 DEAF1 TOLLIP LOC101927503 DRD4 CHID1 SNORA52 MUC2 PDDC1 CDHR5 MIR6744 CRACR2B MUC5AC RASSF7 LOC171391 PIDD1 ANO9 PANO1 AP2A2 RNH1 LMNTD2 TOLLIP-AS1 EPS8L2 TMEM80 MIR210 CEND1 LOC143666 SLC25A22 PTDSS2 CD151 IRF7 POLR2L TSPAN4 MUC5B PHRF1
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain SCT LMNTD2 LRRC56 HRAS MIR210HG DEAF1 DRD4 MIR210 LOC143666 CDHR5 IRF7 RASSF7 PHRF1
nsv528415 Chr.11:558884 - 620599 on Build GRCh38 Loss MIR210 LOC143666 CDHR5 LMNTD2 IRF7 MIR210HG RASSF7 PHRF1
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SIGIRR SCT TALDO1 LOC101059906 LRRC56 HRAS RPLP2 MIR210HG PNPLA2 DEAF1 DRD4 CHID1 SNORA52 PDDC1 CDHR5 CRACR2B RASSF7 LOC171391 PIDD1 ANO9 PANO1 AP2A2 RNH1 LMNTD2 B4GALNT4 EPS8L2 TMEM80 MIR210 CEND1 LOC143666 SLC25A22 PTDSS2 CD151 IRF7 POLR2L PKP3 TSPAN4 PHRF1
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain SCT LOC101059906 RNH1 LMNTD2 LRRC56 HRAS MIR210HG DEAF1 DRD4 MIR210 LOC143666 CDHR5 PTDSS2 IRF7 RASSF7 PHRF1
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SCT TALDO1 LOC101059906 LRRC56 HRAS RPLP2 MIR210HG PNPLA2 DEAF1 DRD4 CHID1 SNORA52 PDDC1 CDHR5 CRACR2B RASSF7 LOC171391 PIDD1 PANO1 RNH1 LMNTD2 EPS8L2 TMEM80 MIR210 CEND1 LOC143666 SLC25A22 PTDSS2 CD151 IRF7 POLR2L TSPAN4 PHRF1
nsv469924 Chr.11:549119 - 609887 on Build GRCh38 Gain MIR210 LOC143666 LMNTD2 LRRC56 MIR210HG RASSF7 PHRF1

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More Information


Additional Information:

For this assay, SNP(s) [rs113317441] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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