Hs04399372_cn

• Gene Symbol: HOTS
• Assay Reference Genome Location: Chr.11:1992744 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 103344718
• Gene Name: H19 opposite tumor suppressor
• Gene Aliases: -
• Location: Chr.11:1992408-1996294 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HOTS	NM_001293171.2	1	337	NP_001280100.1

Target Gene Details

• Entrez Gene ID: 104355220
• Gene Name: long intergenic non-protein coding RNA 1219
• Gene Aliases: -
• Location: Chr.11:1991096-1993469 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LINC01219	NR_126400.1
	BX092271.1

Target Gene Details

• Entrez Gene ID: 6150
• Gene Name: mitochondrial ribosomal protein L23
• Gene Aliases: L23MRP, RPL23, RPL23L
• Location: Chr.11:1947272-2013176 on Build GRCh38
• Assay Gene Location:

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
MRPL23

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1047474	Chr.11:1803515 - 2043381 on Build GRCh38	Gain	SNORD131 MIR675 MIR4298 LSP1 MRPL23-AS1 TNNI2 SYT8 HOTS TNNT3 MRPL23 LINC01219 MIR7847 H19 LINC01150
nsv522320	Chr.11:1835882 - 1996938 on Build GRCh38	Loss	SNORD131 MIR675 MIR4298 LSP1 MRPL23-AS1 TNNI2 SYT8 HOTS TNNT3 MRPL23 LINC01219 MIR7847 H19 LINC01150
dgv1015n100	Chr.11:1946041 - 2008048 on Build GRCh38	Gain	SNORD131 MIR675 MRPL23-AS1 LINC01219 H19 HOTS MRPL23
nsv516622	Chr.11:1927731 - 1993479 on Build GRCh38	Loss	SNORD131 MRPL23-AS1 LINC01219 HOTS TNNT3 MRPL23
nsv553064	Chr.11:1943082 - 2001669 on Build GRCh38	Loss	SNORD131 MIR675 MRPL23-AS1 LINC01219 H19 HOTS MRPL23
nsv469926	Chr.11:1813024 - 2036416 on Build GRCh38	Loss	SNORD131 MIR675 MIR4298 LSP1 MRPL23-AS1 TNNI2 SYT8 HOTS TNNT3 MRPL23 LINC01219 MIR7847 H19 LINC01150
nsv951283	Chr.11:1913571 - 2040070 on Build GRCh38	Deletion	SNORD131 MIR675 MRPL23-AS1 LINC01219 H19 HOTS TNNT3 MRPL23
esv29980	Chr.11:1820597 - 2097889 on Build GRCh38	Loss	SNORD131 MIR675 MIR4298 LSP1 MRPL23-AS1 TNNI2 SYT8 HOTS TNNT3 MRPL23 LINC01219 MIR7847 H19 LINC01150
nsv467645	Chr.11:1733170 - 2418537 on Build GRCh38	Gain	ASCL2 TNNI2 SYT8 IGF2-AS IFITM10 TSPAN32 HOTS TNNT3 INS-IGF2 MIR4686 MRPL23 TSSC4 C11orf21 TRPM5 CD81 LINC01219 TH MIR483 H19 SNORD131 MIR675 MIR4298 LSP1 MRPL23-AS1 CD81-AS1 INS CTSD IGF2 MIR7847 LINC01150

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation