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See other RBFOX1 CNV Assays ›
Gene Symbol
RBFOX1
Assay Reference Genome
Location

Chr.16:5245157 on build GRCh38
Cytoband
16p13.3
Assay ID Hs04457878_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54715

Gene Name:

 RNA binding protein, fox-1 homolog 1

Gene Aliases:

 2BP1, A2BP1, FOX-1, FOX1, HRNBP1

Location:

 Chr.16:5239749-7713343 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RBFOX1 XM_017023319.1 XP_016878808.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1035156 Chr.16:5091032 - 5996934 on Build GRCh38 Gain LINC01570 EEF2KMT MIR8065 RBFOX1
nsv974753 Chr.16:5236416 - 5296073 on Build GRCh38 Duplication RBFOX1
nsv428318 Chr.16:5011594 - 5374828 on Build GRCh38 Gain C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1
nsv516117 Chr.16:5235393 - 5301110 on Build GRCh38 Loss RBFOX1
esv3637713 Chr.16:4957958 - 5307305 on Build GRCh38 Gain C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1
dgv2696n100 Chr.16:5114681 - 5298137 on Build GRCh38 Loss RBFOX1
nsv1046986 Chr.16:4049000 - 5555721 on Build GRCh38 Gain LOC105371063 TFAP4 SEC14L5 NAGPA-AS1 PAM16 LINC01569 NUDT16L1 CORO7 UBN1 ADCY9 MIR6769A SEPT12 ROGDI HMOX2 SRL RBFOX1 ANKS3 CDIP1 SMIM22 NMRAL1 MGRN1 C16orf71 NAGPA DNAJA3 PPL CORO7-PAM16 UBALD1 GLYR1 C16orf89 GLIS2-AS1 ALG1 VASN C16orf96 EEF2KMT GLIS2 ZNF500
nsv1045304 Chr.16:5205761 - 5326875 on Build GRCh38 Loss RBFOX1
esv34300 Chr.16:5005938 - 5322534 on Build GRCh38 Gain C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1
nsv1038475 Chr.16:5004985 - 5310633 on Build GRCh38 Gain C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1
esv2760069 Chr.16:4922849 - 5374828 on Build GRCh38 Gain+Loss C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1 PPL
nsv571303 Chr.16:4960912 - 5284683 on Build GRCh38 Loss C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1
nsv817715 Chr.16:5006294 - 5309352 on Build GRCh38 Gain C16orf89 SEC14L5 ALG1 EEF2KMT NAGPA-AS1 NAGPA RBFOX1

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More Information


Additional Information:

For this assay, SNP(s) [rs112800026] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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