Genomic Map
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Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | NP_001275721.1 | |||
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | NP_940883.2 | |||
| NR_110142.1 | ||||
| XM_011526845.1 | XP_011525147.1 | |||
| XM_011526846.1 | XP_011525148.1 | |||
| XM_011526847.1 | XP_011525149.1 | |||
| XM_011526848.1 | XP_011525150.1 | |||
| XM_011526849.1 | XP_011525151.1 | |||
| XM_017026666.1 | XP_016882155.1 | |||
| AY358542.1 | AAQ88906.1 | |||
| BC100943.2 | AAI00944.1 | |||
| DQ479397.1 | ||||
| FJ584316.1 | ||||
| FJ584317.1 | ||||
| FJ584318.1 | ||||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | ||||
| FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv458782 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
 MIR935
CACNG6
CACNG8
VSTM1
TARM1
|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
OSCAR
NDUFA3
TFPT
VSTM1
TARM1
PRPF31
|
| nsv182 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
OSCAR
VSTM1
TARM1
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
MIR935
CACNG6
CACNG8
CACNG7
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
MIR512-1
MIR520B
MIR515-2
MIR517C
MIR372
LILRA6
MIR518E
MIR518A1
MIR512-2
MIR524
TFPT
MIR516A1
MIR4752
ZNF331
VN1R4
LILRB5
TMC4
PRKCG
MIR516A2
MIR935
MIR516B2
LOC105372457
MIR526A1
MIR520C
MIR525
MIR517B
MIR520G
MIR1283-1
ZNF765
MIR519E
MIR520E
MIR520A
PRPF31
MBOAT7
CNOT3
CACNG8
CACNG7
MIR521-2
MIR526A2
ZNF665
MIR517A
MIR518F
MYADM
MIR520H
LENG1
MIR520F
LILRB3
NDUFA3
ZNF845
MIR371B
MIR373
MIR519C
ZNF813
MIR1323
RPS9
MIR518A2
MIR371A
ZNF761
MIR519A2
TPM3P9
OSCAR
LOC284379
ZNF677
NLRP12
DPRX
MIR519D
MIR527
MIR518C
MIR526B
TARM1
MIR522
MIR520D
MIR519B
MIR521-1
CACNG6
MIR498
LILRA5
MIR523
VSTM1
LILRB2
VN1R2
ZNF818P
MIR515-1
TSEN34
BIRC8
MIR519A1
MIR518B
MIR516B1
MIR518D
FAM90A27P
ZNF525
MIR1283-2
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
MIR935
OSCAR
CACNG6
NDUFA3
CACNG8
TFPT
VSTM1
TARM1
PRPF31
|
Back To TopMore Information
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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