Hs04516878_cn

• Gene Symbol: KANTR
• Assay Reference Genome Location: Chr.X:53113274 on build GRCh38
• Cytoband: Xp11.22

Target Gene Details

• Entrez Gene ID: 102723508
• Gene Name: KDM5C adjacent non-coding transcript
• Gene Aliases: LINC01155, Spasm
• Location: Chr.X:53094157-53144072 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
KANTR	NR_110456.1
	AL599773.1
	BX353482.2
	CF994433.1
	EF565109.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv508773	Chr.X:53034408 - 53141410 on Build GRCh38	Insertion	GPR173 TSPYL2 KANTR
esv2740175	Chr.X:52862926 - 55652533 on Build GRCh38	Deletion	RIBC1 PAGE2 SNORA11 FOXR2 MTRNR2L10 XAGE3 MAGEH1 PAGE5 ALAS2 HUWE1 SNORA109 FGD1 KDM5C MIR4536-1 SMC1A KANTR MIR4536-2 PAGE2B ITIH6 PFKFB1 FAM104B TRO FAM156B APEX2 HSD17B10 MIR6857 MIR98 TSPYL2 MAGED2 MIRLET7F2 GNL3L TSR2 WNK3 GPR173 USP51 PHF8 PAGE3 MIR6894 IQSEC2 FAM156A MIR6895 LOC100421746 FAM120C
nsv435891	Chr.X:52861979 - 55653313 on Build GRCh38	Deletion	RIBC1 PAGE2 SNORA11 FOXR2 MTRNR2L10 XAGE3 MAGEH1 PAGE5 ALAS2 HUWE1 SNORA109 FGD1 KDM5C MIR4536-1 SMC1A KANTR MIR4536-2 PAGE2B ITIH6 PFKFB1 FAM104B TRO FAM156B APEX2 HSD17B10 MIR6857 MIR98 TSPYL2 MAGED2 MIRLET7F2 GNL3L TSR2 WNK3 GPR173 USP51 PHF8 PAGE3 MIR6894 IQSEC2 FAM156A MIR6895 LOC100421746 FAM120C

More Information

Additional Information:

For this assay, SNP(s) [rs79055434] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation