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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30144014 on build GRCh38
Cytoband
6p22.1
Assay ID Hs04891365_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 NP_001273562.1
NM_138700.4 NP_619645.1
XM_011514305.1 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 XP_011512610.1
XM_011514309.1 XP_011512611.1
AF489517.1 AAM09503.1
BC060785.1 AAH60785.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion PSORS1C1 TRIM40 DHX16 IER3 MIR877 UBD RPP21 HLA-H C6orf136 HCG9 MICA MRPS18B OR2H2 MOG GABBR1 ATAT1 ABCF1 TCF19 RNF39 HLA-E TRIM15 IFITM4P OR12D3 HLA-G PSORS1C2 NRM HLA-A MDC1-AS1 TRIM10 OR2J2 OR12D2 PPP1R18 HCG4B CDSN MAS1L HLA-F-AS1 LINC00243 HCG18 TRIM31-AS1 HCG8 MUC21 CCHCR1 DDR1 MIR6891 HCG27 HLA-K PPP1R11 PPP1R10 C6orf15 LOC101929006 PSORS1C3 OR5V1 ZFP57 HCG22 GNL1 SFTA2 HLA-F HCG4 MDC1 ZNRD1 LOC554223 TRIM39-RPP21 VARS2 HLA-C HLA-J MIR4640 DPCR1 OR11A1 LOC105375014 FLOT1 TRIM39 TUBB TRIM31 HLA-L HCG20 OR14J1 LINC01015 SNORD32B OR10C1 GTF2H4 ZNRD1ASP OR2H1 MUC22 TRIM26 PRR3 POU5F1 HCG17 HLA-B
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion PSORS1C1 TRIM40 DHX16 IER3 MIR877 OR2J3 UBD HCG14 RPP21 HLA-H C6orf136 HCG9 MRPS18B OR2H2 MOG GABBR1 ATAT1 ZNF311 ABCF1 TCF19 RNF39 HLA-E TRIM15 OR2B3 IFITM4P OR12D3 HLA-G PSORS1C2 NRM HLA-A MDC1-AS1 TRIM10 TRIM27 OR2J2 OR12D2 PPP1R18 HCG4B CDSN MAS1L HLA-F-AS1 LINC00243 HCG18 TRIM31-AS1 HCG8 MUC21 CCHCR1 OR2W1 DDR1 HCG27 HLA-K PPP1R11 PPP1R10 C6orf15 LOC101929006 PSORS1C3 LINC01623 OR5V1 ZFP57 HCG16 HCG22 GNL1 SFTA2 HLA-F HCG4 MDC1 LINC00533 ZNRD1 LOC554223 TRIM39-RPP21 VARS2 HLA-J MIR4640 DPCR1 OR11A1 LOC105375014 FLOT1 TRIM39 TUBB TRIM31 LOC100129636 LINC01556 HLA-L HCG20 OR14J1 LINC01015 SNORD32B OR10C1 GTF2H4 ZNRD1ASP OR2H1 MUC22 TRIM26 PRR3 POU5F1 HCG17
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion PSORS1C1 TRIM40 DHX16 IER3 MIR877 RPP21 HLA-H C6orf136 HCG9 MRPS18B ATAT1 ABCF1 TCF19 RNF39 HLA-E TRIM15 IFITM4P HLA-G PSORS1C2 NRM HLA-A MDC1-AS1 TRIM10 PPP1R18 HCG4B CDSN HLA-F-AS1 LINC00243 HCG18 TRIM31-AS1 HCG8 MUC21 CCHCR1 DDR1 HCG27 HLA-K PPP1R11 PPP1R10 C6orf15 PSORS1C3 HCG22 GNL1 SFTA2 HLA-F HCG4 MDC1 ZNRD1 LOC554223 TRIM39-RPP21 VARS2 HLA-C HLA-J MIR4640 DPCR1 LOC105375014 FLOT1 TRIM39 TUBB TRIM31 HLA-L HCG20 GTF2H4 ZNRD1ASP MUC22 TRIM26 PRR3 POU5F1 HCG17
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion TRIM15 TRIM40 PPP1R11 HLA-A TRIM31 TRIM10 HLA-L HCG9 ZNRD1 ZNRD1ASP TRIM31-AS1 HCG8 TRIM26 HLA-J HCG17 RNF39
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss PSORS1C1 TRIM40 DHX16 IER3 MIR877 RPP21 HLA-H C6orf136 HCG9 MRPS18B ATAT1 ABCF1 TCF19 RNF39 HLA-E TRIM15 PSORS1C2 NRM HLA-A MDC1-AS1 TRIM10 PPP1R18 HCG4B CDSN LINC00243 HCG18 TRIM31-AS1 HCG8 MUC21 CCHCR1 DDR1 HCG27 HLA-K PPP1R11 PPP1R10 C6orf15 PSORS1C3 HCG22 GNL1 SFTA2 MDC1 ZNRD1 TRIM39-RPP21 VARS2 HLA-C HLA-J MIR4640 DPCR1 LOC105375014 FLOT1 TRIM39 TUBB TRIM31 HLA-L HCG20 GTF2H4 ZNRD1ASP MUC22 TRIM26 PRR3 POU5F1 HCG17
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PSORS1C1 TRIM40 DHX16 IER3 MIR877 RPP21 LOC102725068 C6orf136 MICA MRPS18B ATAT1 ABCF1 TCF19 RNF39 HLA-E TRIM15 PSORS1C2 NRM MDC1-AS1 TRIM10 HCG26 PPP1R18 CDSN LINC00243 HCG18 TRIM31-AS1 HCG8 MUC21 CCHCR1 HCP5 DDR1 MIR6891 HCG27 PPP1R11 PPP1R10 C6orf15 PSORS1C3 HCG22 GNL1 SFTA2 MDC1 ZNRD1 TRIM39-RPP21 VARS2 HLA-C HLA-J MIR4640 DPCR1 LOC105375014 FLOT1 TRIM39 TUBB TRIM31 HLA-L HCG20 GTF2H4 ZNRD1ASP MUC22 TRIM26 PRR3 POU5F1 HCG17 HLA-B

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