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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30144014 on build GRCh38
Cytoband
6p22.1
Assay ID Hs04891365_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 NP_001273562.1
NM_138700.4 NP_619645.1
XM_011514305.1 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 XP_011512610.1
XM_011514309.1 XP_011512611.1
AF489517.1 AAM09503.1
BC060785.1 AAH60785.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion OR12D2 TRIM40 HCG4 ABCF1 HLA-C HLA-H GTF2H4 TRIM39 OR11A1 GABBR1 LOC105375014 HLA-B OR14J1 TUBB HLA-L HLA-F RPP21 HLA-E PPP1R18 MIR6891 HCG4B IFITM4P PSORS1C3 OR2J2 OR10C1 DHX16 TRIM39-RPP21 TCF19 PSORS1C1 HCG20 DDR1 ZNRD1 HCG8 TRIM26 OR2H2 PPP1R10 CDSN VARS2 TRIM15 HLA-J GNL1 SFTA2 LOC554223 TRIM31-AS1 ZNRD1ASP MUC21 MIR877 PRR3 OR2H1 SNORD32B MDC1-AS1 MUC22 HCG22 TRIM31 C6orf15 HCG27 C6orf136 HLA-G ATAT1 NRM IER3 HCG17 PPP1R11 TRIM10 OR12D3 HLA-K POU5F1 LOC101929006 MAS1L MOG MICA ZFP57 HLA-F-AS1 MDC1 MRPS18B HCG18 UBD LINC00243 CCHCR1 RNF39 PSORS1C2 MIR4640 HLA-A DPCR1 LINC01015 OR5V1 FLOT1 HCG9
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion OR12D2 TRIM40 HCG4 ABCF1 HLA-H GTF2H4 TRIM39 OR11A1 GABBR1 HCG16 LOC105375014 OR14J1 TUBB HLA-L HLA-F RPP21 HLA-E PPP1R18 HCG4B IFITM4P PSORS1C3 OR2J2 OR10C1 DHX16 TRIM39-RPP21 TCF19 PSORS1C1 HCG20 DDR1 ZNRD1 HCG8 TRIM26 OR2H2 LOC100129636 PPP1R10 CDSN VARS2 TRIM15 HLA-J GNL1 SFTA2 LOC554223 TRIM31-AS1 ZNRD1ASP MUC21 HCG14 LINC00533 MIR877 PRR3 OR2H1 SNORD32B MDC1-AS1 MUC22 HCG22 TRIM31 C6orf15 HCG27 C6orf136 OR2J3 HLA-G ATAT1 NRM IER3 HCG17 PPP1R11 TRIM10 LINC01623 OR12D3 HLA-K POU5F1 LOC101929006 OR2B3 MAS1L MOG ZFP57 HLA-F-AS1 MDC1 MRPS18B OR2W1 HCG18 LINC01556 UBD LINC00243 TRIM27 CCHCR1 RNF39 PSORS1C2 MIR4640 HLA-A DPCR1 LINC01015 OR5V1 FLOT1 HCG9 ZNF311
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion TRIM40 HCG4 ABCF1 HLA-C HLA-H GTF2H4 TRIM39 LOC105375014 TUBB HLA-L HLA-F RPP21 HLA-E PPP1R18 HCG4B IFITM4P PSORS1C3 DHX16 TRIM39-RPP21 TCF19 PSORS1C1 HCG20 DDR1 ZNRD1 HCG8 TRIM26 PPP1R10 CDSN VARS2 TRIM15 HLA-J GNL1 SFTA2 LOC554223 TRIM31-AS1 ZNRD1ASP MUC21 MIR877 PRR3 MDC1-AS1 MUC22 HCG22 TRIM31 C6orf15 HCG27 C6orf136 HLA-G ATAT1 NRM IER3 HCG17 PPP1R11 TRIM10 HLA-K POU5F1 HLA-F-AS1 MDC1 MRPS18B HCG18 LINC00243 CCHCR1 RNF39 PSORS1C2 MIR4640 HLA-A DPCR1 FLOT1 HCG9
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss TRIM40 ABCF1 HLA-C HLA-H GTF2H4 TRIM39 LOC105375014 TUBB HLA-L RPP21 HLA-E PPP1R18 HCG4B PSORS1C3 DHX16 TRIM39-RPP21 TCF19 PSORS1C1 HCG20 DDR1 ZNRD1 HCG8 TRIM26 PPP1R10 CDSN VARS2 TRIM15 HLA-J GNL1 SFTA2 TRIM31-AS1 ZNRD1ASP MUC21 MIR877 PRR3 MDC1-AS1 MUC22 HCG22 TRIM31 C6orf15 HCG27 C6orf136 ATAT1 NRM IER3 HCG17 PPP1R11 TRIM10 HLA-K POU5F1 MDC1 MRPS18B HCG18 LINC00243 CCHCR1 RNF39 PSORS1C2 MIR4640 HLA-A DPCR1 FLOT1 HCG9
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion TRIM40 TRIM31 ZNRD1 HCG8 TRIM26 TRIM15 HLA-J HCG17 PPP1R11 TRIM10 RNF39 HLA-L TRIM31-AS1 ZNRD1ASP HLA-A HCG9
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication TRIM40 ABCF1 HLA-C GTF2H4 TRIM39 LOC105375014 HLA-B TUBB HLA-L RPP21 HLA-E PPP1R18 MIR6891 PSORS1C3 DHX16 TRIM39-RPP21 TCF19 PSORS1C1 HCG20 DDR1 ZNRD1 HCG8 TRIM26 PPP1R10 CDSN VARS2 TRIM15 HLA-J GNL1 SFTA2 TRIM31-AS1 ZNRD1ASP MUC21 MIR877 HCP5 PRR3 MDC1-AS1 MUC22 HCG22 TRIM31 C6orf15 HCG27 C6orf136 ATAT1 NRM IER3 HCG17 PPP1R11 TRIM10 POU5F1 MICA LOC102725068 MDC1 MRPS18B HCG26 HCG18 LINC00243 CCHCR1 RNF39 PSORS1C2 MIR4640 DPCR1 FLOT1

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