Name: [Hs04900960_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK316499.1
	BC008834.2	AAH08834.1
	DA065298.1
	DA872118.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	ZBTB9 KIFC1 PHF1 CUTA SYNGAP1 MIR5004
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	B3GALT4 WDR46 KIFC1 SYNGAP1 MIR5004 MIR6873 MIR6834 DAXX VPS52 RGL2 PHF1 PFDN6 CUTA ZBTB22 RPS18 TAPBP
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	ABHD16A ZBTB9 SLC44A4 RING1 LTA MIR3135B HCG23 C6orf25 BAG6 EGFL8 LY6G6D PSMB8-AS1 PRRT1 GPSM3 LY6G5B NOTCH4 PRRC2A SAPCD1 RGL2 CUTA EHMT2 SNORD52 HLA-DMB HLA-DPB1 SNORD48 PPT2-EGFL8 MIR6833 C2 C6orf10 VARS WDR46 DDAH2 HSPA1B MIR4646 MIR6873 PBX2 NCR3 MIR6832 PSMB9 HCG25 PPP1R2P1 DDX39B-AS1 RXRB HSPA1L STK19 HLA-DQB1-AS1 HLA-DRB6 BRD2 MSH5-SAPCD1 HLA-DQB1 HCG26 C6orf48 AGER LOC100287329 SKIV2L ATP6V1G2-DDX39B MICB TAPBP HLA-DPA1 SNORA38 HLA-DQA1 ZBTB12 COL11A2 HCG24 TAP2 HLA-DRB1 HLA-DRA ATF6B LST1 MIR5004 LOC102725068 CYP21A1P MIR6834 MIR6721 PHF1 PPT2 LY6G6F BTNL2 HSD17B8 LTB AGPAT1 NEU1 TNXA HLA-DPB2 C4A CYP21A2 HSPA1A LSM2 FKBPL C2-AS1 VWA7 CLIC1 LY6G6C VPS52 DXO PFDN6 HLA-DOB HLA-DQA2 ZBTB22 TNXB B3GALT4 RNF5 NELFE NFKBIL1 GPANK1 DDX39B SYNGAP1 SNORD117 HLA-DQB2 PSMB8 LOC100294145 DAXX MSH5 APOM LOC101929163 LY6G6E TNF LOC100507547 TAP1 MIR219A1 HLA-DRB5 SNORD84 SLC39A7 HLA-DOA KIFC1 LY6G5C CFB CSNK2B MIR1236 HLA-DMA C4B ATP6V1G2 AIF1 RPS18 C6orf47 MCCD1 SAPCD1-AS1 HCP5
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	ABHD16A ZBTB9 SLC44A4 RING1 LTA MIR3135B HCG23 C6orf25 BAG6 EGFL8 LY6G6D PSMB8-AS1 PRRT1 GPSM3 LY6G5B NOTCH4 PRRC2A SAPCD1 RGL2 CUTA EHMT2 SNORD52 HLA-DMB HLA-DPB1 SNORD48 PPT2-EGFL8 MIR6833 C2 C6orf10 VARS WDR46 DDAH2 HSPA1B MIR4646 MIR6873 PBX2 NCR3 MIR6832 PSMB9 HCG25 PPP1R2P1 DDX39B-AS1 RXRB HSPA1L STK19 HLA-DQB1-AS1 HLA-DRB6 BRD2 MSH5-SAPCD1 HLA-DQB1 HCG26 C6orf48 AGER LOC100287329 SKIV2L ATP6V1G2-DDX39B MICB TAPBP HLA-DPA1 SNORA38 HLA-DQA1 ZBTB12 COL11A2 HCG24 TAP2 HLA-DRB1 HLA-DRA ATF6B LST1 MIR5004 LOC102725068 CYP21A1P MIR6834 MIR6721 PHF1 PPT2 LY6G6F BTNL2 HSD17B8 LTB AGPAT1 NEU1 TNXA HLA-DPB2 C4A CYP21A2 HSPA1A LSM2 FKBPL C2-AS1 VWA7 CLIC1 LY6G6C VPS52 DXO PFDN6 HLA-DOB HLA-DQA2 ZBTB22 TNXB B3GALT4 RNF5 NELFE NFKBIL1 GPANK1 DDX39B SYNGAP1 SNORD117 HLA-DQB2 PSMB8 LOC100294145 DAXX MSH5 APOM LOC101929163 LY6G6E TNF LOC100507547 TAP1 MIR219A1 HLA-DRB5 SNORD84 SLC39A7 HLA-DOA KIFC1 LY6G5C CFB CSNK2B MIR1236 HLA-DMA C4B ATP6V1G2 AIF1 RPS18 C6orf47 MCCD1 SAPCD1-AS1 HCP5
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	B3GALT4 COL11A2 HCG24 TAP2 ZBTB9 WDR46 RING1 SYNGAP1 HLA-DQB2 MIR5004 PSMB8 LOC100294145 MIR6873 MIR6834 DAXX PSMB9 HCG25 PPP1R2P1 MIR3135B PHF1 RXRB HSD17B8 TAP1 MIR219A1 HLA-DPB2 PSMB8-AS1 HLA-DQB1-AS1 BRD2 SLC39A7 HLA-DOA KIFC1 HLA-DQB1 HLA-DMA VPS52 RGL2 PFDN6 CUTA HLA-DOB HLA-DQA2 ZBTB22 RPS18 TAPBP HLA-DMB HLA-DPB1 HLA-DPA1 HLA-DQA1