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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33411575 on build GRCh38
Cytoband
6p21.32
Assay ID Hs04900960_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
Your Price
Online offer: 441.65
441.65
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 XP_011512967.1
XM_011514666.1 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK316499.1
BC008834.2 AAH08834.1
DA065298.1
DA872118.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 SYNGAP1 MIR5004 KIFC1 CUTA PHF1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss DAXX MIR6834 MIR5004 KIFC1 RGL2 WDR46 B3GALT4 VPS52 ZBTB22 SYNGAP1 CUTA PFDN6 RPS18 PHF1 MIR6873 TAPBP
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MSH5-SAPCD1 PSMB8-AS1 HSPA1A HLA-DPB1 LTB ATP6V1G2 LY6G6F HCG25 CLIC1 HCG23 EGFL8 HCP5 SAPCD1-AS1 PPT2 PRRC2A APOM DDAH2 HLA-DQB2 HLA-DOA AGER LY6G5C RGL2 HLA-DQB1 NELFE B3GALT4 COL11A2 AIF1 RXRB HLA-DQB1-AS1 HLA-DQA2 LOC102725068 RNF5 PHF1 FKBPL HLA-DOB PPT2-EGFL8 ABHD16A VWA7 DDX39B PSMB9 TAP1 HSPA1B GPSM3 BTNL2 VPS52 ZBTB22 PBX2 AGPAT1 MCCD1 NFKBIL1 TNXA HCG24 HSD17B8 LOC100287329 MIR6833 HSPA1L SNORD84 SNORA38 CSNK2B MIR4646 MIR5004 KIFC1 CFB LOC101929163 VARS WDR46 NOTCH4 LOC100507547 DDX39B-AS1 MIR6721 RING1 ATP6V1G2-DDX39B GPANK1 PPP1R2P1 HLA-DMA LST1 SNORD48 EHMT2 TAPBP LSM2 SLC44A4 C6orf48 C6orf10 LY6G6C NEU1 LY6G6D BRD2 HLA-DQA1 MIR219A1 CUTA ATF6B C6orf25 LY6G5B C4B CYP21A2 PRRT1 CYP21A1P HLA-DPA1 ZBTB9 SYNGAP1 HCG26 STK19 DXO LY6G6E C2-AS1 MIR6873 TNF SKIV2L HLA-DRB6 HLA-DRB1 C2 DAXX PSMB8 HLA-DPB2 HLA-DRA MIR3135B SNORD117 BAG6 SAPCD1 MSH5 SLC39A7 HLA-DRB5 C4A MIR1236 MIR6834 C6orf47 NCR3 MIR6832 TAP2 SNORD52 TNXB LTA PFDN6 RPS18 LOC100294145 ZBTB12 MICB HLA-DMB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MSH5-SAPCD1 PSMB8-AS1 HSPA1A HLA-DPB1 LTB ATP6V1G2 LY6G6F HCG25 CLIC1 HCG23 EGFL8 HCP5 SAPCD1-AS1 PPT2 PRRC2A APOM DDAH2 HLA-DQB2 HLA-DOA AGER LY6G5C RGL2 HLA-DQB1 NELFE B3GALT4 COL11A2 AIF1 RXRB HLA-DQB1-AS1 HLA-DQA2 LOC102725068 RNF5 PHF1 FKBPL HLA-DOB PPT2-EGFL8 ABHD16A VWA7 DDX39B PSMB9 TAP1 HSPA1B GPSM3 BTNL2 VPS52 ZBTB22 PBX2 AGPAT1 MCCD1 NFKBIL1 TNXA HCG24 HSD17B8 LOC100287329 MIR6833 HSPA1L SNORD84 SNORA38 CSNK2B MIR4646 MIR5004 KIFC1 CFB LOC101929163 VARS WDR46 NOTCH4 LOC100507547 DDX39B-AS1 MIR6721 RING1 ATP6V1G2-DDX39B GPANK1 PPP1R2P1 HLA-DMA LST1 SNORD48 EHMT2 TAPBP LSM2 SLC44A4 C6orf48 C6orf10 LY6G6C NEU1 LY6G6D BRD2 HLA-DQA1 MIR219A1 CUTA ATF6B C6orf25 LY6G5B C4B CYP21A2 PRRT1 CYP21A1P HLA-DPA1 ZBTB9 SYNGAP1 HCG26 STK19 DXO LY6G6E C2-AS1 MIR6873 TNF SKIV2L HLA-DRB6 HLA-DRB1 C2 DAXX PSMB8 HLA-DPB2 HLA-DRA MIR3135B SNORD117 BAG6 SAPCD1 MSH5 SLC39A7 HLA-DRB5 C4A MIR1236 MIR6834 C6orf47 NCR3 MIR6832 TAP2 SNORD52 TNXB LTA PFDN6 RPS18 LOC100294145 ZBTB12 MICB HLA-DMB
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion PSMB8-AS1 DAXX PSMB9 PSMB8 TAP1 HLA-DPB1 HLA-DPB2 HCG25 VPS52 ZBTB22 MIR3135B BRD2 HLA-DQA1 MIR219A1 HCG24 CUTA HSD17B8 SLC39A7 MIR6834 MIR5004 KIFC1 HLA-DQB2 HLA-DOA RGL2 HLA-DQB1 WDR46 B3GALT4 TAP2 HLA-DPA1 RING1 ZBTB9 SYNGAP1 COL11A2 PPP1R2P1 HLA-DMA RXRB HLA-DQB1-AS1 PFDN6 RPS18 HLA-DQA2 PHF1 LOC100294145 HLA-DOB MIR6873 HLA-DMB TAPBP

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