Hs04902394_cn

• Gene Symbol: CLIC1
• Assay Reference Genome Location: Chr.6:31736768 on build GRCh38
• Cytoband: 6p21.33

Target Gene Details

• Entrez Gene ID: 1192
• Gene Name: chloride intracellular channel 1
• Gene Aliases: G6, NCC27
• Location: Chr.6:31730581-31737318 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CLIC1	NM_001287593.1			NP_001274522.1
	BC064527.1			AAH64527.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1126749	Chr.6:31457323 - 32594423 on Build GRCh38	Deletion	LOC101929163 ABHD16A LY6G6C TNXB HCG26 DXO PPT2-EGFL8 MCCD1 NCR3 LTA ATP6V1G2 NELFE FKBPL HSPA1L GPANK1 AGPAT1 HLA-DRA HLA-DRB1 LOC100287329 SNORD52 ATP6V1G2-DDX39B DDX39B-AS1 SNORD117 MSH5-SAPCD1 LSM2 CYP21A2 C6orf10 STK19 SAPCD1-AS1 C2 C6orf25 AIF1 HLA-DRB5 MIR4646 C4A SNORD48 HCP5 LY6G5B SNORD84 LOC102725068 CYP21A1P HLA-DRB6 SKIV2L BTNL2 PRRT1 LST1 C6orf48 EGFL8 LOC100507547 MIR1236 MIR6832 VARS NFKBIL1 LY6G6D ATF6B NEU1 EHMT2 C4B C6orf47 SLC44A4 TNF RNF5 DDX39B GPSM3 VWA7 CLIC1 SAPCD1 MSH5 PRRC2A MIR6721 ZBTB12 HSPA1A NOTCH4 MICB APOM LY6G5C C2-AS1 MIR6833 DDAH2 TNXA PPT2 HSPA1B LY6G6E LY6G6F HCG23 SNORA38 AGER LTB CFB CSNK2B PBX2 BAG6
dgv10403n54	Chr.6:31312324 - 32049763 on Build GRCh38	Loss	ABHD16A LY6G6C TNXB HCG26 DXO MIR6891 MCCD1 NCR3 LTA ATP6V1G2 NELFE HSPA1L GPANK1 LOC100287329 SNORD52 ATP6V1G2-DDX39B DDX39B-AS1 SNORD117 MSH5-SAPCD1 MICA LSM2 CYP21A2 STK19 SAPCD1-AS1 C2 C6orf25 AIF1 MIR4646 C4A SNORD48 HCP5 LY6G5B SNORD84 LOC102725068 CYP21A1P SKIV2L LST1 C6orf48 MIR1236 MIR6832 VARS NFKBIL1 LY6G6D NEU1 EHMT2 HLA-B C4B C6orf47 SLC44A4 TNF DDX39B VWA7 CLIC1 SAPCD1 MSH5 PRRC2A ZBTB12 HSPA1A MICB APOM LY6G5C C2-AS1 DDAH2 TNXA HSPA1B LY6G6E LY6G6F SNORA38 LTB CFB CSNK2B BAG6
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	ABHD16A MCCD1 NCR3 LTA RXRB HLA-DQB1-AS1 FKBPL COL11A2 AGPAT1 HLA-DRB1 LOC100287329 SNORD52 ATP6V1G2-DDX39B PPP1R2P1 LSM2 C6orf10 STK19 C6orf25 ZBTB9 HLA-DRB5 TAP1 HCG24 MIR4646 C4A SNORD48 LY6G5B RGL2 SNORD84 HLA-DRB6 SKIV2L PRRT1 LST1 MIR1236 VARS NFKBIL1 WDR46 TAP2 ATF6B NEU1 HLA-DOB C4B HLA-DPB2 RNF5 MIR6873 SAPCD1 PSMB9 PRRC2A RING1 MIR6721 LOC100294145 HSPA1A MICB LY6G5C PPT2 HSPA1B SLC39A7 LY6G6E LY6G6F SNORA38 LTB HLA-DQA1 CSNK2B LOC101929163 LY6G6C TNXB HCG26 DXO PPT2-EGFL8 MIR6834 PSMB8-AS1 ATP6V1G2 NELFE HCG25 HSPA1L GPANK1 HLA-DRA HLA-DQB2 DDX39B-AS1 SNORD117 MSH5-SAPCD1 CYP21A2 SAPCD1-AS1 C2 HLA-DOA HLA-DQA2 AIF1 HCP5 LOC102725068 CYP21A1P RPS18 CUTA TAPBP BTNL2 C6orf48 DAXX MIR5004 EGFL8 LOC100507547 MIR6832 HLA-DQB1 LY6G6D HLA-DMA EHMT2 SYNGAP1 ZBTB22 PFDN6 C6orf47 SLC44A4 TNF KIFC1 DDX39B VPS52 GPSM3 VWA7 HLA-DPA1 CLIC1 MSH5 MIR3135B PHF1 PSMB8 BRD2 ZBTB12 NOTCH4 HSD17B8 APOM C2-AS1 MIR6833 DDAH2 TNXA HCG23 HLA-DPB1 B3GALT4 MIR219A1 HLA-DMB AGER CFB PBX2 BAG6
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	ABHD16A MCCD1 NCR3 LTA RXRB HLA-DQB1-AS1 FKBPL COL11A2 AGPAT1 HLA-DRB1 LOC100287329 SNORD52 ATP6V1G2-DDX39B PPP1R2P1 LSM2 C6orf10 STK19 C6orf25 ZBTB9 HLA-DRB5 TAP1 HCG24 MIR4646 C4A SNORD48 LY6G5B RGL2 SNORD84 HLA-DRB6 SKIV2L PRRT1 LST1 MIR1236 VARS NFKBIL1 WDR46 TAP2 ATF6B NEU1 HLA-DOB C4B HLA-DPB2 RNF5 MIR6873 SAPCD1 PSMB9 PRRC2A RING1 MIR6721 LOC100294145 HSPA1A MICB LY6G5C PPT2 HSPA1B SLC39A7 LY6G6E LY6G6F SNORA38 LTB HLA-DQA1 CSNK2B LOC101929163 LY6G6C TNXB HCG26 DXO PPT2-EGFL8 MIR6834 PSMB8-AS1 ATP6V1G2 NELFE HCG25 HSPA1L GPANK1 HLA-DRA HLA-DQB2 DDX39B-AS1 SNORD117 MSH5-SAPCD1 CYP21A2 SAPCD1-AS1 C2 HLA-DOA HLA-DQA2 AIF1 HCP5 LOC102725068 CYP21A1P RPS18 CUTA TAPBP BTNL2 C6orf48 DAXX MIR5004 EGFL8 LOC100507547 MIR6832 HLA-DQB1 LY6G6D HLA-DMA EHMT2 SYNGAP1 ZBTB22 PFDN6 C6orf47 SLC44A4 TNF KIFC1 DDX39B VPS52 GPSM3 VWA7 HLA-DPA1 CLIC1 MSH5 MIR3135B PHF1 PSMB8 BRD2 ZBTB12 NOTCH4 HSD17B8 APOM C2-AS1 MIR6833 DDAH2 TNXA HCG23 HLA-DPB1 B3GALT4 MIR219A1 HLA-DMB AGER CFB PBX2 BAG6
dgv10404n54	Chr.6:31312550 - 32516591 on Build GRCh38	Loss	LOC101929163 ABHD16A LY6G6C TNXB HCG26 DXO PPT2-EGFL8 MIR6891 MCCD1 NCR3 LTA ATP6V1G2 NELFE FKBPL HSPA1L GPANK1 AGPAT1 HLA-DRA LOC100287329 SNORD52 ATP6V1G2-DDX39B DDX39B-AS1 SNORD117 MSH5-SAPCD1 MICA LSM2 CYP21A2 C6orf10 STK19 SAPCD1-AS1 C2 C6orf25 AIF1 MIR4646 C4A SNORD48 HCP5 LY6G5B SNORD84 LOC102725068 CYP21A1P SKIV2L BTNL2 PRRT1 LST1 C6orf48 EGFL8 LOC100507547 MIR1236 MIR6832 VARS NFKBIL1 LY6G6D ATF6B NEU1 EHMT2 HLA-B C4B C6orf47 SLC44A4 TNF RNF5 DDX39B GPSM3 VWA7 CLIC1 SAPCD1 MSH5 PRRC2A MIR6721 ZBTB12 HSPA1A NOTCH4 MICB APOM LY6G5C C2-AS1 MIR6833 DDAH2 TNXA PPT2 HSPA1B LY6G6E LY6G6F HCG23 SNORA38 AGER LTB CFB CSNK2B PBX2 BAG6

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Process(es)

glutathione metabolic process
chloride transport
signal transduction
regulation of ion transmembrane transport
positive regulation of osteoblast differentiation
regulation of cell cycle
regulation of mitochondrial membrane potential
platelet aggregation
chloride transmembrane transport

Function(s)

glutathione transferase activity
voltage-gated ion channel activity
chloride channel activity
protein binding
cadherin binding involved in cell-cell adhesion