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See other CASP4 CNV Assays ›
Gene Symbol
CASP4
Assay Reference Genome
Location

Chr.11:104950505 on build GRCh38
Cytoband
11q22.3
Assay ID Hs05236592_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 837

Gene Name:

 caspase 4

Gene Aliases:

 ICE(rel)II, ICEREL-II, ICH-2, Mih1, Mih1/TX, TX

Location:

 Chr.11:104942866-104968598 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASP4 NM_001225.3 NP_001216.1
NM_033306.2 NP_150649.1
XM_011543019.1 XP_011541321.1
XM_017018397.1 XP_016873886.1
AK057094.1
AK225751.1
AK304222.1
AL050391.1 CAB43686.2
BC017839.1 AAH17839.1
CN261701.1
U25804.1 AAA86890.1
U28014.1 AAA75171.1
U28976.1 AAC99850.1
U28977.1 AAC99851.1
U28978.1 AAC99852.1
U28979.1 AAC99854.1
Z48810.1 CAA88750.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1040784 Chr.11:104893070 - 104985151 on Build GRCh38 Loss CASP12 LOC643733 CASP4
nsv1052674 Chr.11:104111970 - 107043401 on Build GRCh38 Loss AASDHPPT GRIA4 CASP1P2 LOC105369473 CARD18 CASP5 LOC643733 KBTBD3 MSANTD4 LOC101928535 CASP4 LOC102723895 MIR7641-1 CASP12 CASP1 PDGFD CARD17 CARD16 GUCY1A2
esv2750978 Chr.11:104094062 - 105475331 on Build GRCh38 Gain CASP1P2 MIR7641-1 CASP12 CASP1 PDGFD CARD18 CASP5 LOC643733 CARD17 CARD16 CASP4 LOC102723895
nsv1046098 Chr.11:104336482 - 105132934 on Build GRCh38 Loss CASP1P2 CASP12 CASP1 CASP5 LOC643733 CARD17 CARD16 CASP4 LOC102723895
nsv1041081 Chr.11:104927048 - 105041731 on Build GRCh38 Loss CASP1 CASP5 CARD16 CASP4
nsv468862 Chr.11:104903287 - 105372644 on Build GRCh38 Gain CASP1P2 CASP1 CARD18 CASP5 LOC643733 CARD17 CARD16 CASP4
nsv832255 Chr.11:104804191 - 104976234 on Build GRCh38 Loss CASP12 LOC643733 CASP4
nsv1038877 Chr.11:104166130 - 105422422 on Build GRCh38 Gain CASP1P2 MIR7641-1 CASP12 CASP1 CARD18 CASP5 LOC643733 CARD17 CARD16 CASP4 LOC102723895

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More Information


Additional Information:

For this assay, SNP(s) [rs78819381] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Function(s) Process(es)


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