Hs05329314_cn

• Gene Symbol: FAM189A1
• Assay Reference Genome Location: Chr.15:29154678 on build GRCh38
• Cytoband: 15q13.1

Target Gene Details

• Entrez Gene ID: 23359
• Gene Name: family with sequence similarity 189 member A1
• Gene Aliases: TMEM228
• Location: Chr.15:29120252-29570723 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM189A1	NM_015307.1			NP_056122.1
	XM_011521407.2			XP_011519709.1
	AB011146.1			BAA25500.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1040778	Chr.15:28689598 - 30515727 on Build GRCh38	Loss	GOLGA8J ULK4P3 GOLGA8R DKFZP434L187 WHAMMP2 GOLGA6L7P LOC100289656 APBA2 LOC105370746 FAM189A1 GOLGA8M CHRFAM7A LOC105370751 LOC100130111 LOC101060569 GOLGA8T NSMCE3 TJP1 PDCD6IPP2 LOC107984752
nsv527255	Chr.15:28754022 - 30074044 on Build GRCh38	Gain	FAM189A1 LOC100130111 WHAMMP2 GOLGA6L7P LOC100289656 NSMCE3 TJP1 APBA2 PDCD6IPP2 LOC107984752
nsv1039798	Chr.15:28724126 - 30158154 on Build GRCh38	Gain	GOLGA8J ULK4P3 WHAMMP2 GOLGA6L7P LOC100289656 APBA2 FAM189A1 LOC100130111 GOLGA8T NSMCE3 TJP1 PDCD6IPP2 LOC107984752
nsv522597	Chr.15:28724519 - 30074044 on Build GRCh38	Loss	FAM189A1 LOC100130111 WHAMMP2 GOLGA6L7P LOC100289656 NSMCE3 TJP1 APBA2 PDCD6IPP2 LOC107984752
nsv568675	Chr.15:29035149 - 29916451 on Build GRCh38	Gain	FAM189A1 LOC100130111 NSMCE3 TJP1 APBA2
nsv524362	Chr.15:29089598 - 29155854 on Build GRCh38	Loss	FAM189A1 APBA2

More Information

Additional Information:

For this assay, SNP(s) [rs80335077] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation