Hs05397418_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89171880 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	ACSF3 CDH15 LOC400558 LINC00304 SLC22A31
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CTU2 CBFA2T3 LOC107987238 PIEZO1 LINC00304 LOC100129697 SLC22A31 APRT ZNF778 PABPN1L LOC101927793 CDT1 ACSF3 MIR4722 CDH15 GALNS LOC400558 LOC105371409 TRAPPC2L LOC339059 LOC100289580
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 LOC107987238 LINC00304 LOC100129697 SLC22A31 APRT PABPN1L LOC101927793 CDT1 ACSF3 CDH15 GALNS LOC400558 LOC105371409 TRAPPC2L
nsv457620	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	ACSF3 CDH15 LOC400558 LINC00304
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	ACSF3 CDH15 LOC400558 CBFA2T3 LINC00304
nsv457621	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	ACSF3 CDH15 LOC400558 LINC00304 SLC22A31 ZNF778
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	ANKRD11 CBFA2T3 LOC107987238 PIEZO1 LINC00304 LOC100129697 SLC22A31 APRT ZNF778 LOC100287036 PABPN1L LOC101927793 CDT1 ACSF3 CDH15 GALNS LOC400558 LOC105371409 TRAPPC2L LOC339059 LOC100289580 LOC105371414
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 LOC107987238 LINC00304 LOC100129697 APRT PABPN1L LOC101927793 CDT1 ACSF3 CDH15 GALNS LOC400558 LOC105371409 TRAPPC2L
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ANKRD11 ACSF3 CDH15 LOC400558 LINC00304 SLC22A31 ZNF778 LOC105371414
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	GAS8 CTU2 AFG3L1P IL17C LOC107987238 LINC00304 SNAI3-AS1 LOC100129697 LOC101927793 MIR4722 CDH15 MC1R PRDM7 LOC339059 LOC105371414 LOC105371419 TCF25 SPATA2L URAHP ZNF276 PIEZO1 CDK10 CPNE7 SLC22A31 LOC100287036 RPL13 SPG7 SPATA33 LOC400558 LOC105371409 TUBB8P7 TRAPPC2L VPS9D1 MVD LOC100289580 CHMP1A CBFA2T3 FANCA APRT ZNF778 CENPBD1 PABPN1L CDT1 ACSF3 GALNS SNAI3 CYBA FAM157C TUBB3 ANKRD11 DEF8 RNF166 LOC101927817 LOC107984817 DPEP1 DBNDD1 VPS9D1-AS1 GAS8-AS1 SNORD68 SPIRE2
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	ACSF3 CDH15 LOC400558 LINC00304 SLC22A31
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ANKRD11 ACSF3 CDH15 LOC400558 LINC00304 SLC22A31 ZNF778 LOC105371414
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding