Hs05404299_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89174176 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	CDH15 LINC00304 LOC400558 SLC22A31 ACSF3
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CDH15 LINC00304 CBFA2T3 LOC400558 SLC22A31 LOC101927793 PABPN1L LOC100129697 PIEZO1 LOC107987238 ACSF3 CDT1 APRT GALNS TRAPPC2L LOC105371409 ZNF778 LOC100289580 MIR4722 LOC339059 CTU2
nsv457620	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	CDH15 LINC00304 LOC400558 ACSF3
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CDH15 LINC00304 CBFA2T3 LOC400558 SLC22A31 LOC101927793 PABPN1L LOC100129697 LOC107987238 ACSF3 CDT1 APRT GALNS TRAPPC2L LOC105371409
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	CDH15 LINC00304 CBFA2T3 LOC400558 ACSF3
nsv457621	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	CDH15 LINC00304 LOC400558 SLC22A31 ZNF778 ACSF3
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC100287036 CDH15 LINC00304 CBFA2T3 LOC400558 SLC22A31 LOC101927793 PABPN1L LOC100129697 PIEZO1 LOC107987238 ACSF3 CDT1 APRT GALNS LOC105371414 TRAPPC2L LOC105371409 ZNF778 LOC100289580 LOC339059 ANKRD11
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CDH15 LINC00304 CBFA2T3 LOC400558 LOC101927793 PABPN1L LOC100129697 LOC107987238 ACSF3 CDT1 APRT GALNS TRAPPC2L LOC105371409
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	CDH15 LINC00304 LOC400558 SLC22A31 LOC105371414 ZNF778 ACSF3 ANKRD11
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SPATA33 SLC22A31 MC1R GAS8 CENPBD1 TUBB3 LOC107987238 AFG3L1P ACSF3 RPL13 MVD CPNE7 RNF166 FAM157C DPEP1 MIR4722 CTU2 VPS9D1-AS1 LOC105371419 LOC400558 TCF25 LOC100129697 PIEZO1 SNAI3-AS1 FANCA CDT1 APRT SPIRE2 DEF8 LOC105371414 LOC100289580 LOC339059 TUBB8P7 ANKRD11 SNAI3 CDH15 LINC00304 SPG7 CYBA PABPN1L DBNDD1 CDK10 CHMP1A LOC101927817 TRAPPC2L LOC105371409 ZNF778 PRDM7 LOC100287036 CBFA2T3 LOC101927793 IL17C GAS8-AS1 SNORD68 GALNS URAHP ZNF276 VPS9D1 SPATA2L LOC107984817
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	CDH15 LINC00304 LOC400558 SLC22A31 ACSF3
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	CDH15 LINC00304 LOC400558 SLC22A31 LOC105371414 ZNF778 ACSF3 ANKRD11
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding