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See other CDH15 CNV Assays ›
Gene Symbol
CDH15
Assay Reference Genome
Location

Chr.16:89172807 on build GRCh38
Cytoband
16q24.3
Assay ID Hs05451378_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1013

Gene Name:

 cadherin 15

Gene Aliases:

 CDH14, CDH3, CDHM, MCAD, MRD3

Location:

 Chr.16:89171755-89195492 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDH15 NM_004933.2 NP_004924.1
AK308596.1
AK308631.1
BC008951.2 AAH08951.1
D83542.1 BAA12012.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952072 Chr.16:89032193 - 89201992 on Build GRCh38 Deletion CDH15 LOC400558 SLC22A31 ACSF3 LINC00304
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain LOC339059 GALNS TRAPPC2L LOC400558 CDT1 ZNF778 LINC00304 LOC100289580 CBFA2T3 LOC107987238 PABPN1L CTU2 MIR4722 CDH15 LOC101927793 LOC105371409 SLC22A31 APRT ACSF3 LOC100129697 PIEZO1
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss GALNS TRAPPC2L LOC400558 CDT1 LINC00304 CBFA2T3 LOC107987238 PABPN1L CDH15 LOC101927793 LOC105371409 SLC22A31 APRT ACSF3 LOC100129697
nsv457620 Chr.16:89091139 - 89174375 on Build GRCh38 Gain CDH15 LOC400558 ACSF3 LINC00304
nsv573720 Chr.16:88968841 - 89184474 on Build GRCh38 Gain CDH15 LOC400558 ACSF3 LINC00304 CBFA2T3
nsv457621 Chr.16:89100686 - 89217401 on Build GRCh38 Loss CDH15 LOC400558 SLC22A31 ZNF778 ACSF3 LINC00304
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain LOC339059 GALNS TRAPPC2L LOC100287036 LOC400558 CDT1 ZNF778 LINC00304 LOC100289580 CBFA2T3 LOC107987238 PABPN1L LOC105371414 CDH15 LOC101927793 LOC105371409 ANKRD11 SLC22A31 APRT ACSF3 LOC100129697 PIEZO1
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss GALNS TRAPPC2L LOC400558 CDT1 LINC00304 CBFA2T3 LOC107987238 PABPN1L CDH15 LOC101927793 LOC105371409 APRT ACSF3 LOC100129697
dgv3066n100 Chr.16:89067685 - 89301626 on Build GRCh38 Gain LOC105371414 CDH15 LOC400558 ANKRD11 SLC22A31 ZNF778 ACSF3 LINC00304
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss TUBB3 TUBB8P7 SPG7 LOC100287036 DPEP1 MVD VPS9D1 VPS9D1-AS1 ZNF276 LOC100289580 URAHP CTU2 LOC105371414 CDH15 IL17C LOC105371419 SPATA33 AFG3L1P GAS8 TRAPPC2L DEF8 CDT1 SPIRE2 LINC00304 SPATA2L FANCA PABPN1L CPNE7 MIR4722 LOC101927793 ACSF3 LOC100129697 GAS8-AS1 LOC101927817 FAM157C LOC107984817 GALNS PRDM7 LOC400558 CHMP1A ZNF778 DBNDD1 CENPBD1 SNAI3-AS1 SNORD68 LOC105371409 CYBA CDK10 APRT RPL13 LOC339059 TCF25 SNAI3 CBFA2T3 LOC107987238 RNF166 MC1R ANKRD11 SLC22A31 PIEZO1
dgv5320n54 Chr.16:89114475 - 89197443 on Build GRCh38 Loss CDH15 LOC400558 SLC22A31 ACSF3 LINC00304
nsv509638 Chr.16:89152681 - 89296203 on Build GRCh38 Insertion LOC105371414 CDH15 LOC400558 ANKRD11 SLC22A31 ZNF778 ACSF3 LINC00304
nsv573727 Chr.16:89169527 - 89193067 on Build GRCh38 Loss CDH15

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More Information


Additional Information:

For this assay, SNP(s) [rs113693994] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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