Hs05462116_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89173436 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	LOC400558 ACSF3 SLC22A31 CDH15 LINC00304
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CBFA2T3 LOC400558 ACSF3 GALNS SLC22A31 MIR4722 PIEZO1 CTU2 PABPN1L CDT1 ZNF778 APRT TRAPPC2L LOC339059 LOC101927793 CDH15 LOC100289580 LOC105371409 LOC107987238 LINC00304 LOC100129697
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 LOC400558 ACSF3 GALNS SLC22A31 PABPN1L CDT1 APRT TRAPPC2L LOC101927793 CDH15 LOC105371409 LOC107987238 LINC00304 LOC100129697
nsv457620	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	LOC400558 ACSF3 CDH15 LINC00304
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	CBFA2T3 LOC400558 ACSF3 CDH15 LINC00304
nsv457621	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	LOC400558 ACSF3 SLC22A31 CDH15 ZNF778 LINC00304
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	CBFA2T3 LOC400558 ACSF3 GALNS SLC22A31 ANKRD11 PIEZO1 PABPN1L CDT1 ZNF778 APRT TRAPPC2L LOC100287036 LOC339059 LOC101927793 CDH15 LOC100289580 LOC105371409 LOC107987238 LINC00304 LOC100129697 LOC105371414
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 LOC400558 ACSF3 GALNS PABPN1L CDT1 APRT TRAPPC2L LOC101927793 CDH15 LOC105371409 LOC107987238 LINC00304 LOC100129697
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	LOC400558 ACSF3 SLC22A31 ANKRD11 CDH15 ZNF778 LINC00304 LOC105371414
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	VPS9D1 LOC105371419 SPIRE2 SPG7 PIEZO1 FAM157C MC1R CDT1 URAHP VPS9D1-AS1 APRT LOC100287036 SPATA2L LOC105371409 CHMP1A CDK10 DEF8 ZNF276 AFG3L1P TUBB3 ANKRD11 GAS8 SPATA33 CPNE7 TCF25 GAS8-AS1 IL17C TRAPPC2L LOC339059 LOC101927793 LOC100129697 CBFA2T3 LOC400558 RNF166 MIR4722 CTU2 PABPN1L SNAI3 FANCA PRDM7 SNORD68 CDH15 LOC100289580 LOC107987238 LOC101927817 LOC105371414 TUBB8P7 ACSF3 GALNS SLC22A31 MVD SNAI3-AS1 ZNF778 CENPBD1 LOC107984817 CYBA DPEP1 DBNDD1 RPL13 LINC00304
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	LOC400558 ACSF3 SLC22A31 CDH15 LINC00304
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	LOC400558 ACSF3 SLC22A31 ANKRD11 CDH15 ZNF778 LINC00304 LOC105371414
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding