Hs05462116_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89173436 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	ACSF3 LINC00304 CDH15 SLC22A31 LOC400558
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	PABPN1L CTU2 LOC100289580 MIR4722 CDT1 PIEZO1 TRAPPC2L LOC400558 LOC107987238 ZNF778 ACSF3 LOC339059 GALNS CBFA2T3 LINC00304 CDH15 LOC105371409 LOC100129697 SLC22A31 LOC101927793 APRT
nsv573723	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	ACSF3 LINC00304 CDH15 LOC400558
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	PABPN1L CDT1 TRAPPC2L LOC400558 LOC107987238 ACSF3 GALNS CBFA2T3 LINC00304 CDH15 LOC105371409 LOC100129697 SLC22A31 LOC101927793 APRT
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	ACSF3 CBFA2T3 LINC00304 CDH15 LOC400558
nsv573724	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	ZNF778 ACSF3 LINC00304 CDH15 SLC22A31 LOC400558
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	PABPN1L LOC100289580 LOC100287036 CDT1 PIEZO1 TRAPPC2L LOC400558 LOC107987238 ZNF778 ACSF3 LOC339059 LOC105371414 GALNS CBFA2T3 LINC00304 CDH15 LOC105371409 LOC100129697 SLC22A31 LOC101927793 ANKRD11 APRT
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ZNF778 ACSF3 LOC105371414 LINC00304 CDH15 SLC22A31 LOC400558 ANKRD11
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	PABPN1L CDT1 TRAPPC2L LOC400558 LOC107987238 ACSF3 GALNS CBFA2T3 LINC00304 CDH15 LOC105371409 LOC100129697 LOC101927793 APRT
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	PABPN1L LOC100287036 CENPBD1 PIEZO1 TRAPPC2L MVD CPNE7 SPATA2L AFG3L1P IL17C ZNF778 LOC339059 ZNF276 LINC00304 DBNDD1 SNAI3 SPG7 LOC100289580 RNF166 LOC107984817 LOC101927817 LOC400558 RPL13 GAS8 LOC105371419 LOC105371414 SNORD68 CBFA2T3 FANCA CDH15 LOC105371409 LOC100129697 VPS9D1-AS1 SPATA33 SPIRE2 MIR4722 CDT1 CYBA LOC107987238 TUBB8P7 ACSF3 DEF8 TUBB3 GALNS SNAI3-AS1 CDK10 FAM157C SLC22A31 ANKRD11 APRT DPEP1 CTU2 PRDM7 GAS8-AS1 VPS9D1 TCF25 URAHP LOC101927793 CHMP1A MC1R
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	ACSF3 LINC00304 CDH15 SLC22A31 LOC400558
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ZNF778 ACSF3 LOC105371414 LINC00304 CDH15 SLC22A31 LOC400558 ANKRD11
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding