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Gene Symbol
B3GNTL1
Assay Reference Genome
Location

Chr.17:82949552 on build GRCh38
Cytoband
17q25.3
Assay ID Hs05485114_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 146712

Gene Name:

 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1

Gene Aliases:

 3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1

Location:

 Chr.17:82942149-83051845 on Build GRCh38

Assay Gene Location:

 Within Intron 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
B3GNTL1 NM_001009905.2 NP_001009905.1
NM_001320742.1 NP_001307671.1
NM_001320743.1 NP_001307672.1
NR_135465.1
NR_135466.1
XM_006722272.3 XP_006722335.1
XM_011523532.2 XP_011521834.1
XM_011523535.1 XP_011521837.1
XM_017024205.1 XP_016879694.1
XM_017024206.1 XP_016879695.1
AK054757.1
AK126018.1 1 397
AY304503.1 AAQ74775.1
AY634364.1 AAT47555.1
BC019623.1 AAH19623.1
BC110528.1 AAI10529.1
BC110529.1 AAI10530.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1067553 Chr.17:82530808 - 83091923 on Build GRCh38 Loss RAB40B LOC105376791 MIR4525 LOC101929552 B3GNTL1 FN3K WDR45B TBCD FN3KRP FOXK2 METRNL LOC105371944 ZNF750
dgv3296n100 Chr.17:82851564 - 83091923 on Build GRCh38 Gain METRNL B3GNTL1 LOC105371944 TBCD
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain NPLOC4 LOC101929552 MAFG RAC3 ASPSCR1 SLC16A3 CCDC57 DUS1L C17orf62 TSPAN10 TBCD FN3KRP TEX19 DCXR NPB C17orf89 HGS SIRT7 MIR4740 LOC105376791 FAAP100 MIR4525 MIR6787 SLC25A10 CEP131 PYCR1 ANAPC11 FN3K LOC101929511 LOC105376790 CD7 BAHCC1 MYADML2 OXLD1 NOTUM PCYT2 ALYREF MRPL12 STRA13 MAFG-AS1 GPS1 NARF B3GNTL1 WDR45B SNORD134 PPP1R27 MCRIP1 TEPSIN AATK LINC00482 FASN OGFOD3 MIR6786 PDE6G LOC105371944 HEXDC RFNG CSNK1D RAB40B TMEM105 ARL16 LOC100130370 CCDC137 SLC38A10 LOC105371925 SECTM1 MIR3186 AATK-AS1 FOXK2 ARHGDIA P4HB FSCN2 LRRC45 ACTG1 GCGR UTS2R ZNF750
nsv576217 Chr.17:82937869 - 82960820 on Build GRCh38 Loss B3GNTL1 LOC105371944 TBCD
dgv3297n100 Chr.17:82879855 - 83048753 on Build GRCh38 Gain B3GNTL1 LOC105371944 TBCD
nsv529032 Chr.17:82946968 - 82963153 on Build GRCh38 Loss B3GNTL1
nsv1057153 Chr.17:82876571 - 83091923 on Build GRCh38 Loss METRNL B3GNTL1 LOC105371944 TBCD
esv3893052 Chr.17:82895301 - 83102003 on Build GRCh38 Gain METRNL B3GNTL1 LOC105371944 TBCD
nsv1063195 Chr.17:82947423 - 82998143 on Build GRCh38 Gain B3GNTL1
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss LOC101929552 MAFG RAC3 ASPSCR1 SLC16A3 CCDC57 DUS1L C17orf62 TBCD FN3KRP TEX19 DCXR NPB SIRT7 LOC105376791 MIR4525 MIR6787 PYCR1 ANAPC11 FN3K LOC101929511 LOC105376790 CD7 MYADML2 NOTUM PCYT2 ALYREF STRA13 MAFG-AS1 GPS1 NARF B3GNTL1 WDR45B SNORD134 PPP1R27 MCRIP1 FASN OGFOD3 LOC105371944 HEXDC RFNG CSNK1D RAB40B SECTM1 FOXK2 ARHGDIA P4HB METRNL LRRC45 UTS2R ZNF750

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More Information


Additional Information:

For this assay, SNP(s) [rs78455517] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)


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