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Gene Symbol
B3GNTL1
Assay Reference Genome
Location

Chr.17:82949552 on build GRCh38
Cytoband
17q25.3
Assay ID Hs05485114_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 146712

Gene Name:

 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1

Gene Aliases:

 3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1

Location:

 Chr.17:82942149-83051845 on Build GRCh38

Assay Gene Location:

 Within Intron 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
B3GNTL1 NM_001009905.2 NP_001009905.1
NM_001320742.1 NP_001307671.1
NM_001320743.1 NP_001307672.1
NR_135465.1
NR_135466.1
XM_006722272.3 XP_006722335.1
XM_011523532.2 XP_011521834.1
XM_011523535.1 XP_011521837.1
XM_017024205.1 XP_016879694.1
XM_017024206.1 XP_016879695.1
AK054757.1
AK126018.1 1 397
AY304503.1 AAQ74775.1
AY634364.1 AAT47555.1
BC019623.1 AAH19623.1
BC110528.1 AAI10529.1
BC110529.1 AAI10530.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1067553 Chr.17:82530808 - 83091923 on Build GRCh38 Loss FN3KRP WDR45B LOC101929552 TBCD MIR4525 LOC105376791 FOXK2 RAB40B LOC105371944 FN3K METRNL B3GNTL1 ZNF750
dgv3296n100 Chr.17:82851564 - 83091923 on Build GRCh38 Gain LOC105371944 TBCD METRNL B3GNTL1
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain C17orf62 FSCN2 SECTM1 FAAP100 CEP131 PYCR1 MIR4740 MIR4525 STRA13 ASPSCR1 LRRC45 RAB40B HGS DUS1L FASN ARHGDIA TEPSIN LOC105371925 FN3KRP NPLOC4 TBCD LOC105376790 P4HB LOC105376791 FOXK2 NOTUM MCRIP1 SIRT7 TMEM105 PCYT2 MIR6787 ACTG1 PPP1R27 ALYREF HEXDC MIR3186 SLC16A3 MAFG-AS1 WDR45B ANAPC11 LOC100130370 CD7 MAFG CCDC57 SLC38A10 OGFOD3 MRPL12 ARL16 CSNK1D RAC3 SNORD134 B3GNTL1 AATK-AS1 MYADML2 DCXR UTS2R NARF LOC101929511 LOC101929552 TSPAN10 RFNG OXLD1 C17orf89 LOC105371944 BAHCC1 MIR6786 FN3K GPS1 LINC00482 NPB GCGR SLC25A10 PDE6G TEX19 ZNF750 CCDC137 AATK
nsv576217 Chr.17:82937869 - 82960820 on Build GRCh38 Loss LOC105371944 TBCD B3GNTL1
nsv529032 Chr.17:82946968 - 82963153 on Build GRCh38 Loss B3GNTL1
dgv3297n100 Chr.17:82879855 - 83048753 on Build GRCh38 Gain LOC105371944 TBCD B3GNTL1
esv3893052 Chr.17:82895301 - 83102003 on Build GRCh38 Gain LOC105371944 TBCD METRNL B3GNTL1
nsv1057153 Chr.17:82876571 - 83091923 on Build GRCh38 Loss LOC105371944 TBCD METRNL B3GNTL1
nsv1063195 Chr.17:82947423 - 82998143 on Build GRCh38 Gain B3GNTL1
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss C17orf62 SECTM1 PYCR1 MIR4525 STRA13 ASPSCR1 LRRC45 RAB40B DUS1L METRNL FASN ARHGDIA FN3KRP TBCD LOC105376790 P4HB LOC105376791 FOXK2 NOTUM MCRIP1 SIRT7 PCYT2 MIR6787 PPP1R27 ALYREF HEXDC SLC16A3 MAFG-AS1 WDR45B ANAPC11 CD7 MAFG CCDC57 OGFOD3 CSNK1D RAC3 SNORD134 B3GNTL1 MYADML2 DCXR UTS2R NARF LOC101929511 LOC101929552 RFNG LOC105371944 FN3K GPS1 NPB TEX19 ZNF750

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More Information


Additional Information:

For this assay, SNP(s) [rs78455517] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)


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