Hs06118334_cn

• Gene Symbol: GALNT10
• Assay Reference Genome Location: Chr.5:154347155 on build GRCh38
• Cytoband: 5q33.2

Target Gene Details

• Entrez Gene ID: 55568
• Gene Name: polypeptide N-acetylgalactosaminyltransferase 10
• Gene Aliases: GALNACT10, PPGALNACT10, PPGANTASE10
• Location: Chr.5:154190735-154420984 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GALNT10	NM_198321.3			NP_938080.1
	AB078145.1			BAC56890.1
	AJ505950.1			CAD44532.1
	AK023782.1			BAB14676.1
	AK074132.1			BAB84958.1
	AK127135.1

Target Gene Details

• Entrez Gene ID: 100302181
• Gene Name: microRNA 1294
• Gene Aliases: MIRN1294, hsa-mir-1294, mir-1294
• Location: Chr.5:154347106-154347247 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
MIR1294	NR_031626.1	1	50

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1015362	Chr.5:154215521 - 154450098 on Build GRCh38	Gain	GALNT10 MIR1294 SAP30L-AS1 SAP30L
nsv5079	Chr.5:154316156 - 154348055 on Build GRCh38	Insertion	GALNT10 MIR1294

More Information

Additional Information:

For this assay, SNP(s) [rs114020978] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

protein O-linked glycosylation
O-glycan processing

Function(s)

polypeptide N-acetylgalactosaminyltransferase activity
carbohydrate binding
metal ion binding