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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30142381 on build GRCh38
Cytoband
6p22.1
Assay ID Hs06147549_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 NP_001273562.1
NM_138700.4 NP_619645.1
XM_011514305.1 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 XP_011512610.1
XM_011514309.1 XP_011512611.1
AF489517.1 AAM09503.1
BC060785.1 AAH60785.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HCG9 RNF39 LOC554223 TCF19 MDC1-AS1 HLA-H MOG PPP1R18 MRPS18B HCG4B TRIM31 HLA-L ZNRD1ASP HCG18 MIR4640 IFITM4P ATAT1 TRIM40 OR12D3 HLA-K DHX16 ZNRD1 TRIM39-RPP21 LOC105375014 OR12D2 NRM TRIM15 PSORS1C3 HLA-C OR5V1 LINC01015 HCG17 OR10C1 OR2H1 SFTA2 POU5F1 HLA-G HLA-B PRR3 HCG8 TRIM10 PSORS1C2 C6orf136 HLA-A OR14J1 ZFP57 OR11A1 MIR877 HCG22 OR2H2 MUC21 HLA-F-AS1 DPCR1 GNL1 TUBB MUC22 DDR1 PPP1R10 CCHCR1 HCG27 HCG4 GABBR1 TRIM26 HLA-J HCG20 SNORD32B C6orf15 ABCF1 GTF2H4 HLA-F MAS1L LOC101929006 MICA UBD OR2J2 LINC00243 TRIM39 RPP21 VARS2 FLOT1 MIR6891 PSORS1C1 TRIM31-AS1 IER3 CDSN PPP1R11 MDC1 HLA-E
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HCG9 RNF39 LOC554223 TCF19 MDC1-AS1 HLA-H MOG OR2J3 PPP1R18 MRPS18B HCG4B TRIM31 ZNF311 HLA-L ZNRD1ASP HCG18 MIR4640 IFITM4P ATAT1 TRIM40 OR12D3 HLA-K DHX16 ZNRD1 TRIM39-RPP21 LOC105375014 OR12D2 NRM TRIM15 PSORS1C3 OR2W1 OR5V1 LINC01015 LINC01623 HCG17 OR10C1 OR2H1 HCG14 SFTA2 POU5F1 HLA-G PRR3 HCG8 TRIM10 PSORS1C2 C6orf136 HLA-A OR14J1 ZFP57 OR11A1 MIR877 LINC00533 HCG22 OR2H2 MUC21 HLA-F-AS1 DPCR1 GNL1 TUBB MUC22 DDR1 PPP1R10 LINC01556 CCHCR1 HCG27 HCG4 GABBR1 TRIM26 HLA-J OR2B3 HCG20 SNORD32B HCG16 C6orf15 ABCF1 GTF2H4 HLA-F MAS1L LOC101929006 LOC100129636 UBD OR2J2 LINC00243 TRIM39 RPP21 VARS2 FLOT1 PSORS1C1 TRIM31-AS1 IER3 CDSN PPP1R11 MDC1 HLA-E TRIM27
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HCG9 RNF39 LOC554223 TCF19 MDC1-AS1 HLA-H PPP1R18 MRPS18B HCG4B TRIM31 HLA-L ZNRD1ASP HCG18 MIR4640 IFITM4P ATAT1 TRIM40 HLA-K DHX16 ZNRD1 TRIM39-RPP21 LOC105375014 NRM TRIM15 PSORS1C3 HLA-C HCG17 SFTA2 POU5F1 HLA-G PRR3 HCG8 TRIM10 PSORS1C2 C6orf136 HLA-A MIR877 HCG22 MUC21 HLA-F-AS1 DPCR1 GNL1 TUBB MUC22 DDR1 PPP1R10 CCHCR1 HCG27 HCG4 TRIM26 HLA-J HCG20 C6orf15 ABCF1 GTF2H4 HLA-F LINC00243 TRIM39 RPP21 VARS2 FLOT1 PSORS1C1 TRIM31-AS1 IER3 CDSN PPP1R11 MDC1 HLA-E
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HCG9 RNF39 TCF19 MDC1-AS1 HLA-H PPP1R18 MRPS18B HCG4B TRIM31 HLA-L ZNRD1ASP HCG18 MIR4640 ATAT1 TRIM40 HLA-K DHX16 ZNRD1 TRIM39-RPP21 LOC105375014 NRM TRIM15 PSORS1C3 HLA-C HCG17 SFTA2 POU5F1 PRR3 HCG8 TRIM10 PSORS1C2 C6orf136 HLA-A MIR877 HCG22 MUC21 DPCR1 GNL1 TUBB MUC22 DDR1 PPP1R10 CCHCR1 HCG27 TRIM26 HLA-J HCG20 C6orf15 ABCF1 GTF2H4 LINC00243 TRIM39 RPP21 VARS2 FLOT1 PSORS1C1 TRIM31-AS1 IER3 CDSN PPP1R11 MDC1 HLA-E
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion HCG9 RNF39 HCG17 TRIM31 HLA-L ZNRD1ASP TRIM40 HCG8 ZNRD1 TRIM10 TRIM26 HLA-J HLA-A TRIM15 TRIM31-AS1 PPP1R11
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication RNF39 TCF19 MDC1-AS1 PPP1R18 MRPS18B TRIM31 HLA-L ZNRD1ASP HCG18 MIR4640 ATAT1 TRIM40 DHX16 ZNRD1 TRIM39-RPP21 LOC105375014 NRM TRIM15 PSORS1C3 HLA-C HCG17 SFTA2 POU5F1 HLA-B HCP5 PRR3 HCG8 TRIM10 PSORS1C2 C6orf136 MIR877 HCG22 MUC21 DPCR1 GNL1 TUBB MUC22 DDR1 HCG26 PPP1R10 CCHCR1 HCG27 TRIM26 HLA-J HCG20 C6orf15 ABCF1 GTF2H4 MICA LINC00243 TRIM39 RPP21 VARS2 FLOT1 MIR6891 PSORS1C1 TRIM31-AS1 IER3 CDSN PPP1R11 MDC1 LOC102725068 HLA-E

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