Hs06703202_cn

• Gene Symbol: LOC101927179
• Assay Reference Genome Location: Chr.4:47849585 on build GRCh38
• Cytoband: 4p12

Target Gene Details

• Entrez Gene ID: 101927179
• Gene Name: uncharacterized LOC101927179
• Gene Aliases: -
• Location: Chr.4:47831345-47896848 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101927179	NR_125880.1
	NR_125881.1
	AL599247.1
	BX280044.1

Target Gene Details

• Entrez Gene ID: 152518
• Gene Name: nuclear transcription factor, X-box binding like 1
• Gene Aliases: CDZFP, HOZFP, OZFP, URCC5
• Location: Chr.4:47847233-47914667 on Build GRCh38
• Assay Gene Location: Within Intron 23

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFXL1	NM_001278623.1			NP_001265552.1
	NM_001278624.1			NP_001265553.1
	NM_152995.5			NP_694540.3
	NR_103795.1
	AB085695.1
	AB181916.1
	AK131285.1			BAD18459.1
	AK302440.1
	AY134856.1			AAN08626.1
	BC018019.1			AAH18019.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv5202n100	Chr.4:47486414 - 47904818 on Build GRCh38	Gain	MIR8053 CORIN LOC101927179 NFXL1 ATP10D
nsv4328	Chr.4:47814450 - 47860236 on Build GRCh38	Deletion	CORIN LOC101927179 NFXL1
nsv594118	Chr.4:47558369 - 47915713 on Build GRCh38	Loss	MIR8053 CORIN LOC101927157 LOC101927179 NFXL1 ATP10D
nsv829924	Chr.4:47668888 - 47864648 on Build GRCh38	Gain	CORIN LOC101927179 NFXL1

More Information

Additional Information:

For this assay, SNP(s) [rs77032921] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
zinc ion binding