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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30135931 on build GRCh38
Cytoband
6p22.1
Assay ID Hs06786152_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 XM_011514305.1 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 XP_011512610.1
XM_011514309.1 XP_011512611.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion PPP1R10 TRIM26 GTF2H4 TRIM31-AS1 PRR3 HLA-A DDR1 IER3 HCG4B TRIM15 PSORS1C1 MIR6891 OR2J2 OR5V1 GABBR1 NRM MAS1L UBD C6orf15 OR11A1 HCG27 OR14J1 FLOT1 RPP21 OR2H2 OR12D2 PSORS1C3 MDC1 HCG8 IFITM4P MIR4640 LOC101929006 MOG TRIM39-RPP21 MIR877 TRIM10 LOC105375014 HCG18 TUBB ABCF1 LINC00243 RNF39 ZNRD1 HLA-K HLA-C HLA-E HLA-L PPP1R18 MICA GNL1 HCG20 MUC22 ATAT1 HLA-G HCG22 DHX16 HCG17 MUC21 TRIM40 LINC01015 TCF19 POU5F1 SFTA2 LOC554223 TRIM39 VARS2 HLA-J HCG9 C6orf136 ZNRD1ASP OR12D3 CCHCR1 CDSN HLA-H OR2H1 ZFP57 HCG4 DPCR1 MRPS18B SNORD32B MDC1-AS1 OR10C1 HLA-F PPP1R11 PSORS1C2 HLA-B HLA-F-AS1 TRIM31
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion PPP1R10 TRIM26 GTF2H4 TRIM31-AS1 PRR3 HLA-A DDR1 IER3 HCG4B TRIM15 PSORS1C1 OR2J2 LINC01556 HCG14 OR5V1 GABBR1 NRM OR2B3 OR2W1 MAS1L UBD C6orf15 OR11A1 HCG27 OR14J1 FLOT1 RPP21 OR2H2 OR12D2 PSORS1C3 MDC1 HCG8 IFITM4P MIR4640 LOC101929006 MOG TRIM39-RPP21 MIR877 TRIM10 LOC105375014 HCG18 HCG16 TUBB ABCF1 LINC00243 RNF39 ZNRD1 HLA-K LINC00533 HLA-E HLA-L PPP1R18 GNL1 HCG20 MUC22 ATAT1 HLA-G HCG22 DHX16 HCG17 MUC21 LINC01623 TRIM40 TRIM27 LOC100129636 LINC01015 TCF19 POU5F1 OR2J3 SFTA2 LOC554223 TRIM39 VARS2 HLA-J HCG9 C6orf136 ZNRD1ASP OR12D3 CCHCR1 CDSN HLA-H OR2H1 ZFP57 HCG4 DPCR1 MRPS18B SNORD32B MDC1-AS1 ZNF311 OR10C1 HLA-F PPP1R11 PSORS1C2 HLA-F-AS1 TRIM31
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion PPP1R10 TRIM26 GTF2H4 TRIM31-AS1 PRR3 HLA-A DDR1 IER3 HCG4B TRIM15 PSORS1C1 NRM C6orf15 HCG27 FLOT1 RPP21 PSORS1C3 MDC1 HCG8 IFITM4P MIR4640 TRIM39-RPP21 MIR877 TRIM10 LOC105375014 HCG18 TUBB ABCF1 LINC00243 RNF39 ZNRD1 HLA-K HLA-C HLA-E HLA-L PPP1R18 GNL1 HCG20 MUC22 ATAT1 HLA-G HCG22 DHX16 HCG17 MUC21 TRIM40 TCF19 POU5F1 SFTA2 LOC554223 TRIM39 VARS2 HLA-J HCG9 C6orf136 ZNRD1ASP CCHCR1 CDSN HLA-H HCG4 DPCR1 MRPS18B MDC1-AS1 HLA-F PPP1R11 PSORS1C2 HLA-F-AS1 TRIM31
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss PPP1R10 TRIM26 GTF2H4 TRIM31-AS1 PRR3 HLA-A DDR1 IER3 HCG4B TRIM15 PSORS1C1 NRM C6orf15 HCG27 FLOT1 RPP21 PSORS1C3 MDC1 HCG8 MIR4640 TRIM39-RPP21 MIR877 TRIM10 LOC105375014 HCG18 TUBB ABCF1 LINC00243 RNF39 ZNRD1 HLA-K HLA-C HLA-E HLA-L PPP1R18 GNL1 HCG20 MUC22 ATAT1 HCG22 DHX16 HCG17 MUC21 TRIM40 TCF19 POU5F1 SFTA2 TRIM39 VARS2 HLA-J HCG9 C6orf136 ZNRD1ASP CCHCR1 CDSN HLA-H DPCR1 MRPS18B MDC1-AS1 PPP1R11 PSORS1C2 TRIM31
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion ZNRD1ASP HLA-L TRIM26 HCG8 TRIM31-AS1 HLA-A HCG17 TRIM40 TRIM10 TRIM15 RNF39 PPP1R11 ZNRD1 HLA-J TRIM31 HCG9
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PPP1R10 TRIM26 GTF2H4 TRIM31-AS1 PRR3 HCP5 DDR1 IER3 TRIM15 PSORS1C1 MIR6891 NRM C6orf15 HCG27 FLOT1 RPP21 HCG26 PSORS1C3 MDC1 HCG8 MIR4640 TRIM39-RPP21 MIR877 TRIM10 LOC105375014 HCG18 TUBB ABCF1 LINC00243 RNF39 ZNRD1 HLA-C HLA-E HLA-L PPP1R18 MICA GNL1 HCG20 MUC22 ATAT1 HCG22 DHX16 HCG17 MUC21 TRIM40 TCF19 POU5F1 SFTA2 TRIM39 VARS2 HLA-J LOC102725068 C6orf136 ZNRD1ASP CCHCR1 CDSN DPCR1 MRPS18B MDC1-AS1 PPP1R11 PSORS1C2 HLA-B TRIM31

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