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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30135931 on build GRCh38
Cytoband
6p22.1
Assay ID Hs06786152_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 XM_011514305.1 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 XP_011512610.1
XM_011514309.1 XP_011512611.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-J GTF2H4 ABCF1 TRIM31 CCHCR1 GABBR1 OR5V1 LOC105375014 HLA-G RNF39 LOC101929006 OR12D3 RPP21 NRM ATAT1 HLA-H PRR3 PPP1R11 TUBB HCG17 MDC1 TRIM10 MDC1-AS1 SNORD32B UBD TRIM31-AS1 HLA-F PSORS1C3 HCG18 MUC22 POU5F1 HLA-L OR2J2 CDSN TRIM40 PPP1R10 LINC00243 ZFP57 C6orf136 HCG8 ZNRD1ASP HLA-F-AS1 HCG4B TRIM26 MICA MOG PSORS1C1 TRIM15 HLA-B MUC21 HCG22 OR11A1 DPCR1 OR14J1 IFITM4P PSORS1C2 HLA-A OR2H1 OR10C1 FLOT1 IER3 C6orf15 HLA-E GNL1 MIR877 SFTA2 MRPS18B MIR4640 MAS1L VARS2 TRIM39 OR2H2 OR12D2 LINC01015 HCG9 HLA-C HCG20 HCG27 TCF19 DDR1 TRIM39-RPP21 MIR6891 DHX16 HLA-K HCG4 LOC554223 PPP1R18 ZNRD1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HLA-J GTF2H4 OR2B3 ABCF1 TRIM31 ZNF311 CCHCR1 GABBR1 OR5V1 LOC105375014 HLA-G RNF39 LOC101929006 OR12D3 RPP21 NRM ATAT1 HLA-H PRR3 PPP1R11 TUBB HCG17 MDC1 LOC100129636 OR2W1 TRIM10 MDC1-AS1 SNORD32B LINC01556 UBD TRIM31-AS1 HLA-F PSORS1C3 HCG18 MUC22 OR2J3 POU5F1 HLA-L OR2J2 CDSN TRIM40 PPP1R10 LINC00243 TRIM27 ZFP57 C6orf136 HCG8 ZNRD1ASP HLA-F-AS1 HCG4B TRIM26 MOG PSORS1C1 TRIM15 MUC21 HCG14 HCG22 OR11A1 LINC01623 DPCR1 OR14J1 IFITM4P PSORS1C2 HLA-A HCG16 OR2H1 OR10C1 FLOT1 IER3 C6orf15 HLA-E GNL1 MIR877 SFTA2 MRPS18B MIR4640 MAS1L VARS2 TRIM39 OR2H2 OR12D2 LINC01015 HCG9 HCG20 HCG27 TCF19 DDR1 TRIM39-RPP21 DHX16 HLA-K LINC00533 HCG4 LOC554223 PPP1R18 ZNRD1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HLA-J GTF2H4 ABCF1 TRIM31 CCHCR1 LOC105375014 HLA-G RNF39 RPP21 NRM ATAT1 HLA-H PRR3 PPP1R11 TUBB HCG17 MDC1 TRIM10 MDC1-AS1 TRIM31-AS1 HLA-F PSORS1C3 HCG18 MUC22 POU5F1 HLA-L CDSN TRIM40 PPP1R10 LINC00243 C6orf136 HCG8 ZNRD1ASP HLA-F-AS1 HCG4B TRIM26 PSORS1C1 TRIM15 MUC21 HCG22 DPCR1 IFITM4P PSORS1C2 HLA-A FLOT1 IER3 C6orf15 HLA-E GNL1 MIR877 SFTA2 MRPS18B MIR4640 VARS2 TRIM39 HCG9 HLA-C HCG20 HCG27 TCF19 DDR1 TRIM39-RPP21 DHX16 HLA-K HCG4 LOC554223 PPP1R18 ZNRD1
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion HLA-J PPP1R11 HCG17 TRIM15 TRIM10 TRIM31 TRIM31-AS1 HCG9 HLA-L RNF39 TRIM40 HLA-A HCG8 ZNRD1ASP TRIM26 ZNRD1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HLA-J GTF2H4 ABCF1 TRIM31 CCHCR1 LOC105375014 RNF39 RPP21 NRM ATAT1 HLA-H PRR3 PPP1R11 TUBB HCG17 MDC1 TRIM10 MDC1-AS1 TRIM31-AS1 PSORS1C3 HCG18 MUC22 POU5F1 HLA-L CDSN TRIM40 PPP1R10 LINC00243 C6orf136 HCG8 ZNRD1ASP HCG4B TRIM26 PSORS1C1 TRIM15 MUC21 HCG22 DPCR1 PSORS1C2 HLA-A FLOT1 IER3 C6orf15 HLA-E GNL1 MIR877 SFTA2 MRPS18B MIR4640 VARS2 TRIM39 HCG9 HLA-C HCG20 HCG27 TCF19 DDR1 TRIM39-RPP21 DHX16 HLA-K PPP1R18 ZNRD1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HLA-J GTF2H4 ABCF1 TRIM31 HCP5 CCHCR1 LOC105375014 RNF39 RPP21 NRM ATAT1 PRR3 PPP1R11 TUBB HCG17 MDC1 TRIM10 MDC1-AS1 TRIM31-AS1 PSORS1C3 HCG18 MUC22 POU5F1 HLA-L CDSN TRIM40 PPP1R10 LINC00243 C6orf136 HCG8 ZNRD1ASP TRIM26 MICA PSORS1C1 TRIM15 HLA-B MUC21 HCG22 DPCR1 HCG26 PSORS1C2 FLOT1 IER3 C6orf15 HLA-E GNL1 MIR877 LOC102725068 SFTA2 MRPS18B MIR4640 VARS2 TRIM39 HLA-C HCG20 HCG27 TCF19 DDR1 TRIM39-RPP21 MIR6891 DHX16 PPP1R18 ZNRD1

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