Hs06925078_cn

• Gene Symbol: STK38L
• Assay Reference Genome Location: Chr.12:27273706 on build GRCh38
• Cytoband: 12p11.23

Target Gene Details

• Entrez Gene ID: 23012
• Gene Name: serine/threonine kinase 38 like
• Gene Aliases: NDR2
• Location: Chr.12:27244143-27325959 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STK38L	NM_015000.3			NP_055815.1
	XM_005253342.3			XP_005253399.1
	XM_006719058.3			XP_006719121.1
	XM_006719059.3			XP_006719122.1
	XM_017019036.1			XP_016874525.1
	AB023182.2
	AK291055.1
	AK304755.1
	BC028603.1			AAH28603.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv263e214	Chr.12:27152627 - 27304231 on Build GRCh38	Gain	STK38L
dgv1406n100	Chr.12:27128236 - 27640822 on Build GRCh38	Gain	ARNTL2-AS1 SMCO2 PPFIBP1 STK38L ARNTL2
dgv2417n54	Chr.12:27068022 - 27638988 on Build GRCh38	Gain	ARNTL2-AS1 SMCO2 PPFIBP1 C12orf71 STK38L ARNTL2
nsv436825	Chr.12:27135971 - 27642579 on Build GRCh38	Insertion	ARNTL2-AS1 SMCO2 PPFIBP1 STK38L ARNTL2
esv2745664	Chr.12:27017516 - 27820117 on Build GRCh38	Deletion	KLHL42 ARNTL2-AS1 SMCO2 MED21 PPFIBP1 MANSC4 C12orf71 REP15 MRPS35 STK38L ARNTL2
nsv521872	Chr.12:27114021 - 27635541 on Build GRCh38	Gain	ARNTL2-AS1 SMCO2 PPFIBP1 STK38L ARNTL2
dgv271e199	Chr.12:27089700 - 27631451 on Build GRCh38	Deletion	ARNTL2-AS1 SMCO2 PPFIBP1 STK38L ARNTL2

More Information

Additional Information:

For this assay, SNP(s) [rs140667295] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

non-receptor serine/threonine protein kinase

Gene Ontology Categories:

Process(es)

protein phosphorylation
peptidyl-serine phosphorylation
intracellular signal transduction
regulation of cellular component organization

Function(s)

magnesium ion binding
actin binding
protein serine/threonine kinase activity
protein binding
ATP binding