Hs06969088_cn

• Gene Symbol: ARNTL2
• Assay Reference Genome Location: Chr.12:27392694 on build GRCh38
• Cytoband: 12p11.23

Target Gene Details

• Entrez Gene ID: 56938
• Gene Name: aryl hydrocarbon receptor nuclear translocator like 2
• Gene Aliases: BMAL2, CLIF, MOP9, PASD9, bHLHe6
• Location: Chr.12:27332854-27425813 on Build GRCh38
• Assay Gene Location: Within Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARNTL2	NM_001248002.1			NP_001234931.1
	NM_001248003.1			NP_001234932.1
	NM_001248004.1			NP_001234933.1
	NM_001248005.1			NP_001234934.1
	NM_020183.4			NP_064568.3
	XM_006719112.3			XP_006719175.1
	XM_006719114.3			XP_006719177.1
	XM_011520766.2			XP_011519068.1
	XM_011520768.2			XP_011519070.1
	XM_011520769.2			XP_011519071.1
	XM_011520770.2			XP_011519072.1
	XM_011520771.2			XP_011519073.1
	XM_017019666.1			XP_016875155.1
	XM_017019667.1			XP_016875156.1
	XM_017019668.1			XP_016875157.1
	XM_017019669.1			XP_016875158.1
	AB039921.1			BAB01485.1
	AF231338.1			AAF71306.1
	AF231339.1			AAF71307.1
	AF246960.1			AAL50339.1
	AF246961.1			AAL50340.1
	AF246962.1			AAL50341.1
	AF246963.1			AAL50342.1
	AK296706.1
	BC000172.3			AAH00172.3
	BC125061.1
	BC125062.1

Target Gene Details

• Entrez Gene ID: 101928646
• Gene Name: ARNTL2 antisense RNA 1
• Gene Aliases: -
• Location: Chr.12:27389789-27446634 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARNTL2-AS1	NR_109975.1
	BU568793.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1406n100	Chr.12:27128236 - 27640822 on Build GRCh38	Gain	STK38L ARNTL2-AS1 ARNTL2 SMCO2 PPFIBP1
dgv2417n54	Chr.12:27068022 - 27638988 on Build GRCh38	Gain	C12orf71 STK38L ARNTL2-AS1 ARNTL2 SMCO2 PPFIBP1
esv3628933	Chr.12:27275994 - 27403117 on Build GRCh38	Gain	STK38L ARNTL2-AS1 ARNTL2
nsv436825	Chr.12:27135971 - 27642579 on Build GRCh38	Insertion	STK38L ARNTL2-AS1 ARNTL2 SMCO2 PPFIBP1
esv2745664	Chr.12:27017516 - 27820117 on Build GRCh38	Deletion	C12orf71 MRPS35 REP15 STK38L ARNTL2-AS1 KLHL42 ARNTL2 MED21 MANSC4 SMCO2 PPFIBP1
nsv521872	Chr.12:27114021 - 27635541 on Build GRCh38	Gain	STK38L ARNTL2-AS1 ARNTL2 SMCO2 PPFIBP1
dgv271e199	Chr.12:27089700 - 27631451 on Build GRCh38	Deletion	STK38L ARNTL2-AS1 ARNTL2 SMCO2 PPFIBP1

More Information

Additional Information:

For this assay, SNP(s) [rs75144234] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
circadian rhythm
entrainment of circadian clock
positive regulation of circadian rhythm
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
protein dimerization activity
E-box binding