Hs07471818_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537033 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	FER1L5 LMAN2L ARID5A NEURL3 CNNM4 KANSL3 LOC105373496
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	SNRNP200 FAHD2CP MIR3127 LOC101927053 LOC100506076 NEURL3 STARD7 CIAO1 DUSP2 GPAT2 STARD7-AS1 LOC105373495 ADRA2B FER1L5 CNNM3 SEMA4C ANKRD39 ASTL ANKRD36 LOC107984110 ARID5A ANKRD36B CNNM4 ANKRD36C LOC100506123 NCAPH ANKRD23 LMAN2L ITPRIPL1 LOC653924 FAM178B FAHD2B KANSL3 LOC105373496 TMEM127
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	SNRNP200 FAHD2CP MIR3127 LOC101927053 LOC100506076 NEURL3 STARD7 CIAO1 DUSP2 GPAT2 STARD7-AS1 LOC105373495 ADRA2B FER1L5 CNNM3 SEMA4C ANKRD39 ASTL ANKRD36 LOC107984110 ARID5A ANKRD36B CNNM4 ANKRD36C LOC100506123 NCAPH ANKRD23 LMAN2L ITPRIPL1 LOC653924 FAM178B FAHD2B KANSL3 LOC105373496 TMEM127
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	SNRNP200 FAHD2CP MIR3127 LOC101927053 LOC100506076 NEURL3 STARD7 CIAO1 DUSP2 GPAT2 STARD7-AS1 LOC105373495 ADRA2B FER1L5 CNNM3 SEMA4C ANKRD39 ASTL ANKRD36 LOC107984110 ARID5A ANKRD36B CNNM4 ANKRD36C LOC100506123 NCAPH ANKRD23 LMAN2L ITPRIPL1 LOC653924 FAM178B FAHD2B KANSL3 LOC105373496 TMEM127

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding