Hs07471820_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537554 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	AY358167.1	1	210	AAQ88534.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	KANSL3 LMAN2L NEURL3 FER1L5 CNNM4 ARID5A LOC105373496
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	KANSL3 ANKRD36C NEURL3 SEMA4C FER1L5 ANKRD23 FAHD2CP LOC100506123 ANKRD36B ARID5A LOC653924 GPAT2 LMAN2L ANKRD36 FAM178B LOC107984110 TMEM127 NCAPH DUSP2 CIAO1 MIR3127 ASTL LOC105373495 ADRA2B CNNM3 LOC105373496 LOC101927053 STARD7 FAHD2B ANKRD39 CNNM4 SNRNP200 LOC100506076 STARD7-AS1 ITPRIPL1
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	KANSL3 ANKRD36C NEURL3 SEMA4C FER1L5 ANKRD23 FAHD2CP LOC100506123 ANKRD36B ARID5A LOC653924 GPAT2 LMAN2L ANKRD36 FAM178B LOC107984110 TMEM127 NCAPH DUSP2 CIAO1 MIR3127 ASTL LOC105373495 ADRA2B CNNM3 LOC105373496 LOC101927053 STARD7 FAHD2B ANKRD39 CNNM4 SNRNP200 LOC100506076 STARD7-AS1 ITPRIPL1
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	KANSL3 ANKRD36C NEURL3 SEMA4C FER1L5 ANKRD23 FAHD2CP LOC100506123 ANKRD36B ARID5A LOC653924 GPAT2 LMAN2L ANKRD36 FAM178B LOC107984110 TMEM127 NCAPH DUSP2 CIAO1 MIR3127 ASTL LOC105373495 ADRA2B CNNM3 LOC105373496 LOC101927053 STARD7 FAHD2B ANKRD39 CNNM4 SNRNP200 LOC100506076 STARD7-AS1 ITPRIPL1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding