Hs07471838_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537676 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	AY358167.1	1	332	AAQ88534.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	KANSL3 LOC105373496 FER1L5 NEURL3 LMAN2L CNNM4 ARID5A
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	ANKRD23 FAHD2B SNRNP200 STARD7-AS1 NCAPH NEURL3 DUSP2 GPAT2 ANKRD36 LOC101927053 LOC100506076 SEMA4C CIAO1 LOC100506123 CNNM4 KANSL3 ANKRD36C LOC107984110 ANKRD36B FAM178B TMEM127 LMAN2L ITPRIPL1 ASTL LOC105373496 FER1L5 FAHD2CP MIR3127 CNNM3 STARD7 ANKRD39 ADRA2B LOC105373495 LOC653924 ARID5A
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	ANKRD23 FAHD2B SNRNP200 STARD7-AS1 NCAPH NEURL3 DUSP2 GPAT2 ANKRD36 LOC101927053 LOC100506076 SEMA4C CIAO1 LOC100506123 CNNM4 KANSL3 ANKRD36C LOC107984110 ANKRD36B FAM178B TMEM127 LMAN2L ITPRIPL1 ASTL LOC105373496 FER1L5 FAHD2CP MIR3127 CNNM3 STARD7 ANKRD39 ADRA2B LOC105373495 LOC653924 ARID5A
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	ANKRD23 FAHD2B SNRNP200 STARD7-AS1 NCAPH NEURL3 DUSP2 GPAT2 ANKRD36 LOC101927053 LOC100506076 SEMA4C CIAO1 LOC100506123 CNNM4 KANSL3 ANKRD36C LOC107984110 ANKRD36B FAM178B TMEM127 LMAN2L ITPRIPL1 ASTL LOC105373496 FER1L5 FAHD2CP MIR3127 CNNM3 STARD7 ANKRD39 ADRA2B LOC105373495 LOC653924 ARID5A

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding