Hs07472639_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537125 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	CNNM4 LOC105373496 LMAN2L FER1L5 ARID5A KANSL3 NEURL3
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	LOC100506123 LMAN2L FER1L5 ARID5A ANKRD36B KANSL3 STARD7-AS1 TMEM127 STARD7 ANKRD36C CNNM4 FAM178B ASTL LOC101927053 ANKRD36 FAHD2B GPAT2 LOC105373496 FAHD2CP ANKRD39 SEMA4C LOC653924 DUSP2 LOC100506076 NEURL3 ANKRD23 ADRA2B MIR3127 LOC105373495 SNRNP200 CIAO1 NCAPH ITPRIPL1 CNNM3 LOC107984110
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	LOC100506123 LMAN2L FER1L5 ARID5A ANKRD36B KANSL3 STARD7-AS1 TMEM127 STARD7 ANKRD36C CNNM4 FAM178B ASTL LOC101927053 ANKRD36 FAHD2B GPAT2 LOC105373496 FAHD2CP ANKRD39 SEMA4C LOC653924 DUSP2 LOC100506076 NEURL3 ANKRD23 ADRA2B MIR3127 LOC105373495 SNRNP200 CIAO1 NCAPH ITPRIPL1 CNNM3 LOC107984110
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	LOC100506123 LMAN2L FER1L5 ARID5A ANKRD36B KANSL3 STARD7-AS1 TMEM127 STARD7 ANKRD36C CNNM4 FAM178B ASTL LOC101927053 ANKRD36 FAHD2B GPAT2 LOC105373496 FAHD2CP ANKRD39 SEMA4C LOC653924 DUSP2 LOC100506076 NEURL3 ANKRD23 ADRA2B MIR3127 LOC105373495 SNRNP200 CIAO1 NCAPH ITPRIPL1 CNNM3 LOC107984110

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding