Hs07473030_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537253 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	LOC105373496 ARID5A LMAN2L FER1L5 CNNM4 KANSL3 NEURL3
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	ARID5A ANKRD36 LMAN2L LOC107984110 ANKRD23 LOC100506123 ASTL GPAT2 KANSL3 FAHD2B DUSP2 NCAPH ADRA2B FER1L5 LOC653924 STARD7-AS1 ANKRD36C CNNM3 LOC100506076 CNNM4 NEURL3 FAHD2CP LOC105373496 SEMA4C ITPRIPL1 SNRNP200 ANKRD39 ANKRD36B CIAO1 STARD7 MIR3127 LOC105373495 FAM178B TMEM127 LOC101927053
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	ARID5A ANKRD36 LMAN2L LOC107984110 ANKRD23 LOC100506123 ASTL GPAT2 KANSL3 FAHD2B DUSP2 NCAPH ADRA2B FER1L5 LOC653924 STARD7-AS1 ANKRD36C CNNM3 LOC100506076 CNNM4 NEURL3 FAHD2CP LOC105373496 SEMA4C ITPRIPL1 SNRNP200 ANKRD39 ANKRD36B CIAO1 STARD7 MIR3127 LOC105373495 FAM178B TMEM127 LOC101927053
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	ARID5A ANKRD36 LMAN2L LOC107984110 ANKRD23 LOC100506123 ASTL GPAT2 KANSL3 FAHD2B DUSP2 NCAPH ADRA2B FER1L5 LOC653924 STARD7-AS1 ANKRD36C CNNM3 LOC100506076 CNNM4 NEURL3 FAHD2CP LOC105373496 SEMA4C ITPRIPL1 SNRNP200 ANKRD39 ANKRD36B CIAO1 STARD7 MIR3127 LOC105373495 FAM178B TMEM127 LOC101927053

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding