Hs07473055_cn

• Gene Symbol: ARID5A
• Assay Reference Genome Location: Chr.2:96537438 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 10865
• Gene Name: AT-rich interaction domain 5A
• Gene Aliases: MRF-1, MRF1, RP11-363D14
• Location: Chr.2:96536719-96552638 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARID5A	NM_001319085.1			NP_001306014.1
	NM_001319087.1			NP_001306016.1
	NM_001319093.1			NP_001306022.1
	NM_001319094.1			NP_001306023.1
	NM_001319096.1			NP_001306025.1
	NM_212481.2			NP_997646.1
	XM_017003184.1			XP_016858673.1
	AK300173.1
	AK304566.1
	AK307768.1
	AY358167.1	1	94	AAQ88534.1
	BM556343.1
	BX396215.2
	BX648918.1
	CR981009.1
	HY002073.1
	HY076710.1
	M62324.1			AAA36325.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2720413	Chr.2:96472591 - 96793459 on Build GRCh38	Deletion	ARID5A KANSL3 FER1L5 LOC105373496 CNNM4 NEURL3 LMAN2L
dgv607e201	Chr.2:95855884 - 97561622 on Build GRCh38	Deletion	GPAT2 LOC105373496 ADRA2B LOC107984110 CNNM4 CIAO1 ARID5A FAHD2CP ASTL ANKRD23 FAHD2B LOC100506076 LOC101927053 SNRNP200 NEURL3 ITPRIPL1 TMEM127 NCAPH ANKRD39 KANSL3 FAM178B ANKRD36 CNNM3 STARD7 SEMA4C FER1L5 LOC105373495 ANKRD36B MIR3127 LOC653924 LOC100506123 STARD7-AS1 ANKRD36C LMAN2L DUSP2
nsv1135873	Chr.2:95981454 - 97579645 on Build GRCh38	Deletion	GPAT2 LOC105373496 ADRA2B LOC107984110 CNNM4 CIAO1 ARID5A FAHD2CP ASTL ANKRD23 FAHD2B LOC100506076 LOC101927053 SNRNP200 NEURL3 ITPRIPL1 TMEM127 NCAPH ANKRD39 KANSL3 FAM178B ANKRD36 CNNM3 STARD7 SEMA4C FER1L5 LOC105373495 ANKRD36B MIR3127 LOC653924 LOC100506123 STARD7-AS1 ANKRD36C LMAN2L DUSP2
esv3425717	Chr.2:95859900 - 97515905 on Build GRCh38	Duplication	GPAT2 LOC105373496 ADRA2B LOC107984110 CNNM4 CIAO1 ARID5A FAHD2CP ASTL ANKRD23 FAHD2B LOC100506076 LOC101927053 SNRNP200 NEURL3 ITPRIPL1 TMEM127 NCAPH ANKRD39 KANSL3 FAM178B ANKRD36 CNNM3 STARD7 SEMA4C FER1L5 LOC105373495 ANKRD36B MIR3127 LOC653924 LOC100506123 STARD7-AS1 ANKRD36C LMAN2L DUSP2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
protein binding
transcription regulatory region DNA binding