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See other DPH3P1 CNV Assays ›
Gene Symbol
DPH3P1
Assay Reference Genome
Location

Chr.20:62845486 on build GRCh38
Cytoband
20q13.33
Assay ID Hs07491928_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 100132911

Gene Name:

 diphthamide biosynthesis 3 pseudogene 1

Gene Aliases:

 C20orf143, DPH3B, ZCSL1

Location:

 Chr.20:62844566-62846191 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DPH3P1 NM_080750.4 1 921 NP_542788.1

Target Gene Details

Entrez Gene ID:

 10732

Gene Name:

 transcription factor like 5

Gene Aliases:

 CHA, E2BP-1, Figlb, bHLHe82

Location:

 Chr.20:62841014-62861763 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TCFL5 NM_006602.3 NP_006593.2
XM_005260185.3 XP_005260242.1
AB012124.1 BAA36557.1
AF070992.1 AAD53986.1
AJ271337.1 CAC24700.1
BC046933.1 6 2106 AAH46933.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv834027 Chr.20:62707655 - 62874914 on Build GRCh38 Loss COL9A3 MRGBP DPH3P1 NTSR1 OGFR-AS1 LOC107985428 LINC00659 TCFL5 OGFR LOC107987285
nsv828794 Chr.20:62832958 - 62880035 on Build GRCh38 Loss COL9A3 DPH3P1 TCFL5 DIDO1
nsv9825 Chr.20:62775470 - 63601330 on Build GRCh38 Gain MIR3196 FNDC11 COL9A3 HAR1B ARFGAP1 OGFR-AS1 LINC00029 BHLHE23 OGFR LOC100130152 PTK6 SRMS CHRNA4 LOC102723788 COL20A1 KCNQ2 HAR1A LOC107985428 BIRC7 LOC107985425 FLJ16779 MIR4326 LOC100130587 MRGBP DPH3P1 LOC63930 SLC17A9 YTHDF1 GMEB2 TCFL5 DIDO1 MIR124-3 LINC01056 HELZ2 LINC00659 EEF1A2 GID8 NKAIN4 PPDPF
nsv428380 Chr.20:62632018 - 62935383 on Build GRCh38 Loss COL9A3 MRGBP DPH3P1 NTSR1 OGFR-AS1 TCFL5 SLCO4A1-AS1 DIDO1 OGFR LOC107985428 LINC00659 SLCO4A1 LOC107987285

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More Information


Additional Information:

For this assay, SNP(s) [rs77794068] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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