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See other LINC00538 GE Assays ›

Gene Symbol:: LINC00538
Gene Name:: long intergenic non-protein coding RNA 538
Gene Aliases:: PROX1UT, Yiya
Chromosome Location:: Chr.1: 213924749 - 213926654 on Build GRCh38
Species:: Human
Species Specific ID (Flybase ID):: -

Assay ID

Hs04332195_s1

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Catalog #	4426961
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Genomic Map
Assay Details
More Information

Assay Details

Gene Symbol: LINC00538
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_046189.1		1	1122		74
GenBank mRNA	JF495099.1	-	1	1122		74

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	PROX1 antisense RNA 1	PROX1-AS1			Anti-sense	Chr. 1 - 213819641 - 213986153 on NCBI Build GRCh38
Downstream	prospero homeobox 1	PROX1		56.6kb	Sense	Chr. 1 - 213983239 - 214041510 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100011564.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01001786.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Affymetrix

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Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0100017284.hg.1	ENST00000626109.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01027942.hg.1	NR_046189.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01027942.hg.1	TC01001786.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC0100017284.hg.1	ENST00000626109.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100185174.hg.1	NR_046189.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100185174.hg.1	NR_046189.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100185174.hg.1	TC0100011564.hg.1	Clariom D TC