Genomic Map
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Target Gene Details
Entrez Gene ID: | 1201 |
Gene Name: | CLN3, battenin |
Gene Aliases: |
BTS, JNCL |
Location: |
Chr.16:28466653-28492302 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CLN3 | NM_000086.2 | NP_000077.1 | ||
| NM_001042432.1 | NP_001035897.1 | |||
| NM_001286104.1 | NP_001273033.1 | |||
| NM_001286105.1 | NP_001273034.1 | |||
| NM_001286109.1 | NP_001273038.1 | |||
| NM_001286110.1 | NP_001273039.1 | |||
| AK090709.1 | ||||
| AK294250.1 | ||||
| AK295500.1 | ||||
| AK297690.1 | ||||
| AK302027.1 | ||||
| AK302138.1 | ||||
| AK313002.1 | ||||
| AU105965.1 | ||||
| BC002394.2 | AAH02394.1 | |||
| BC004433.1 | AAH04433.1 | |||
| BP252176.1 | ||||
| DA552461.1 | ||||
| DA703317.1 | ||||
| DA869025.1 | ||||
| DB101039.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv509608 | Chr.16:28449797 - 28632895 on Build GRCh38 | Insertion |
 APOBR
SGF29
NUPR1
SULT1A1
CLN3
IL27
SULT1A2
|
| esv2758640 | Chr.16:28163817 - 29139232 on Build GRCh38 | Gain+Loss |
MIR6862-2
MIR6862-1
MIR4517
LAT
NPIP
SH2B1
SULT1A2
EIF3CL
NPIPB9
APOBR
SPNS1
NPIPB8
SGF29
RABEP2
CD19
SULT1A1
IL27
NPIPB6
ATP2A1-AS1
RRN3P2
SBK1
ATP2A1
NFATC2IP
MIR4721
ATXN2L
EIF3C
TUFM
NUPR1
CLN3
LOC101928215
XPO6
|
| nsv1059555 | Chr.16:28373144 - 29195838 on Build GRCh38 | Gain |
MIR6862-2
MIR6862-1
MIR4517
LAT
NPIP
SH2B1
SULT1A2
EIF3CL
NPIPB9
APOBR
SPNS1
NPIPB8
SGF29
RABEP2
CD19
SULT1A1
IL27
ATP2A1-AS1
RRN3P2
ATP2A1
NFATC2IP
MIR4721
ATXN2L
LOC107984832
EIF3C
TUFM
NUPR1
CLN3
LOC101928215
|
| nsv833180 | Chr.16:28346157 - 28574165 on Build GRCh38 | Loss |
EIF3CL
APOBR
MIR6862-1
SGF29
NUPR1
CLN3
IL27
NPIPB6
|
| nsv9415 | Chr.16:28468881 - 28498959 on Build GRCh38 | Gain |
APOBR
CLN3
|
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Additional Information:
For this assay, SNP(s) [rs73533476] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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