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See other CLN3 CNV Assays ›
Gene Symbol
CLN3
Assay Reference Genome
Location

Chr.16:28477538 on build GRCh38
Cytoband
16p12.1
Assay ID Hs00041388_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 1201

Gene Name:

 CLN3, battenin

Gene Aliases:

 BTS, JNCL

Location:

 Chr.16:28466653-28492302 on Build GRCh38

Assay Gene Location:

 Within Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLN3 NM_000086.2 15 1618 NP_000077.1
NM_001042432.1 16 1654 NP_001035897.1
NM_001286104.1 15 1582 NP_001273033.1
NM_001286105.1 13 1459 NP_001273034.1
NM_001286109.1 13 1467 NP_001273038.1
NM_001286110.1 14 1539 NP_001273039.1
AF015593.1 15 1349 AAD01555.1
AF015595.1 13 1169 AAD01557.1
AF015598.1 13 1103 AAD01560.1
AF077956.1 AAD51478.1
AF077957.1 AAD51479.1
AF077958.1 AAD51480.1
AF077959.1 AAD51481.1
AF077960.1 AAD51482.1
AF077961.1 AAD51483.1
AF077962.1 AAD51484.1
AF077963.1 AAD51485.1
AF077964.1 AAD51486.1
AF077965.1 AAD51487.1
AF077966.1 AAD51488.1
AF077967.1 AAD51489.1
AF077968.1 AAD51490.1
AF077969.1 AAD51491.1
AF077970.1 AAD51492.1
AF077971.1 AAD51493.1
AF077972.1 AAD51494.1
AF077973.1 AAD51495.1
AF078169.1 AAD48543.1
AI138575.1 1 262
AK090709.1 15 2823
AK294070.1 14 1463
AK297690.1 13 1401
AK302027.1 15 1322
AK313002.1
BC002394.2 16 1412 AAH02394.1
BC004433.1 16 1412 AAH04433.1
BC111068.1 13 1397 AAI11069.1
U32680.1 15 1432 AAB51075.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion SULT1A1 NUPR1 CLN3 IL27 SGF29 SULT1A2 APOBR
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss SULT1A1 ATP2A1-AS1 IL27 SH2B1 SPNS1 RABEP2 EIF3CL NPIPB9 XPO6 NUPR1 TUFM MIR4721 MIR6862-2 ATXN2L LAT NPIPB8 RRN3P2 MIR6862-1 LOC101928215 SGF29 SULT1A2 NPIP SBK1 APOBR MIR4517 CLN3 NPIPB6 NFATC2IP EIF3C ATP2A1 CD19
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain SULT1A1 ATP2A1-AS1 IL27 SH2B1 SPNS1 RABEP2 EIF3CL NPIPB9 NUPR1 TUFM MIR4721 MIR6862-2 ATXN2L LOC107984832 LAT NPIPB8 RRN3P2 MIR6862-1 LOC101928215 SGF29 SULT1A2 NPIP APOBR MIR4517 CLN3 NFATC2IP EIF3C ATP2A1 CD19
nsv833180 Chr.16:28346157 - 28574165 on Build GRCh38 Loss EIF3CL NUPR1 CLN3 NPIPB6 IL27 MIR6862-1 SGF29 APOBR
nsv9415 Chr.16:28468881 - 28498959 on Build GRCh38 Gain CLN3 APOBR

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