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See other CLN3 CNV Assays ›
Gene Symbol
CLN3
Assay Reference Genome
Location

Chr.16:28477755 on build GRCh38
Cytoband
16p12.1
Assay ID Hs00048469_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 1201

Gene Name:

 CLN3, battenin

Gene Aliases:

 BTS, JNCL

Location:

 Chr.16:28466653-28492302 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 14 - Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLN3 NM_000086.2 NP_000077.1
NM_001042432.1 NP_001035897.1
NM_001286104.1 NP_001273033.1
NM_001286105.1 NP_001273034.1
NM_001286109.1 NP_001273038.1
NM_001286110.1 NP_001273039.1
AF015593.1 AAD01555.1
AF015595.1 AAD01557.1
AF015598.1 AAD01560.1
AF077956.1 AAD51478.1
AF077957.1 AAD51479.1
AF077958.1 AAD51480.1
AF077959.1 AAD51481.1
AF077960.1 AAD51482.1
AF077961.1 AAD51483.1
AF077962.1 AAD51484.1
AF077963.1 AAD51485.1
AF077964.1 AAD51486.1
AF077965.1 AAD51487.1
AF077966.1 AAD51488.1
AF077967.1 AAD51489.1
AF077968.1 AAD51490.1
AF077969.1 AAD51491.1
AF077970.1 AAD51492.1
AF077971.1 AAD51493.1
AF077972.1 AAD51494.1
AF077973.1 AAD51495.1
AF078169.1 AAD48543.1
AK090709.1
AK294070.1
AK297690.1
AK302027.1
AK313002.1
BC002394.2 AAH02394.1
BC004433.1 AAH04433.1
BC111068.1 AAI11069.1
U32680.1 AAB51075.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion SULT1A1 CLN3 NUPR1 SULT1A2 APOBR IL27 SGF29
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss NUPR1 RABEP2 EIF3C MIR6862-2 MIR4517 NPIPB6 NFATC2IP LAT EIF3CL SULT1A2 XPO6 MIR6862-1 MIR4721 ATXN2L ATP2A1 CLN3 ATP2A1-AS1 IL27 NPIPB8 SGF29 LOC101928215 SULT1A1 NPIP RRN3P2 CD19 TUFM APOBR SBK1 SH2B1 SPNS1 NPIPB9
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain NUPR1 RABEP2 EIF3C MIR6862-2 MIR4517 NFATC2IP LAT EIF3CL SULT1A2 MIR6862-1 MIR4721 ATXN2L ATP2A1 CLN3 ATP2A1-AS1 IL27 NPIPB8 SGF29 LOC101928215 SULT1A1 NPIP RRN3P2 CD19 LOC107984832 TUFM APOBR SH2B1 SPNS1 NPIPB9
nsv833180 Chr.16:28346157 - 28574165 on Build GRCh38 Loss CLN3 NUPR1 EIF3CL MIR6862-1 APOBR NPIPB6 IL27 SGF29
nsv9415 Chr.16:28468881 - 28498959 on Build GRCh38 Gain CLN3 APOBR

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