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Gene Symbol
CLN3
Assay Reference Genome
Location

Chr.16:28487507 on build GRCh38
Cytoband
16p12.1
Assay ID Hs00053857_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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Online offer:
4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 1201

Gene Name:

 CLN3, battenin

Gene Aliases:

 BTS, JNCL

Location:

 Chr.16:28466653-28492302 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLN3 NM_000086.2 6 732 NP_000077.1
NM_001042432.1 7 768 NP_001035897.1
NM_001286104.1 6 696 NP_001273033.1
NM_001286105.1 4 573 NP_001273034.1
NM_001286109.1 4 581 NP_001273038.1
NM_001286110.1 5 653 NP_001273039.1
AF015593.1 6 463 AAD01555.1
AF015594.1 5 424 AAD01556.1
AF015595.1 5 427 AAD01557.1
AF015596.1 3 230 AAD01558.1
AF015597.1 6 482 AAD01559.1
AF015598.1 5 434 AAD01560.1
AF015599.1 4 325 AAD01561.1
AF015600.1 4 356 AAD01562.1
AF015601.1 AAD01563.1
AF015602.1 3 220 AAD01564.1
AF077956.1 6 409 AAD51478.1
AF077957.1 6 409 AAD51479.1
AF077958.1 6 409 AAD51480.1
AF077959.1 6 409 AAD51481.1
AF077960.1 6 409 AAD51482.1
AF077961.1 6 409 AAD51483.1
AF077962.1 6 409 AAD51484.1
AF077963.1 6 409 AAD51485.1
AF077964.1 6 409 AAD51486.1
AF077965.1 6 409 AAD51487.1
AF077966.1 6 409 AAD51488.1
AF077967.1 5 329 AAD51489.1
AF077968.1 6 409 AAD51490.1
AF077969.1 4 240 AAD51491.1
AF077970.1 4 240 AAD51492.1
AF077971.1 6 409 AAD51493.1
AF077972.1 6 409 AAD51494.1
AF077973.1 4 250 AAD51495.1
AF078169.1 6 409 AAD48543.1
AK090709.1 8 1763
AK294070.1 5 577
AK294250.1 6 458
AK295500.1 6 656
AK297690.1 4 515
AK302027.1 6 436
AK302138.1 6 457
AK313002.1 7 540
BC002394.2 7 526 AAH02394.1
BC004433.1 7 526 AAH04433.1
BC111068.1 4 511 AAI11069.1
BP252176.1
EF587244.1 2 116
EF587245.1 2 126
U32680.1 6 546 AAB51075.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion SULT1A2 CLN3 IL27 NUPR1 APOBR SULT1A1 SGF29
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss IL27 LOC101928215 ATP2A1-AS1 SPNS1 SULT1A1 SGF29 CD19 NPIPB8 SULT1A2 ATXN2L TUFM MIR4517 APOBR EIF3C NPIPB6 NPIPB9 EIF3CL MIR4721 CLN3 NUPR1 RABEP2 MIR6862-2 RRN3P2 ATP2A1 XPO6 NPIP LAT MIR6862-1 NFATC2IP SBK1 SH2B1
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain IL27 LOC101928215 ATP2A1-AS1 SPNS1 SULT1A1 SGF29 CD19 NPIPB8 SULT1A2 ATXN2L TUFM MIR4517 APOBR EIF3C NPIPB9 EIF3CL MIR4721 CLN3 NUPR1 RABEP2 MIR6862-2 RRN3P2 ATP2A1 NPIP LAT MIR6862-1 NFATC2IP LOC107984832 SH2B1
nsv833180 Chr.16:28346157 - 28574165 on Build GRCh38 Loss CLN3 IL27 NUPR1 MIR6862-1 APOBR NPIPB6 EIF3CL SGF29
nsv9415 Chr.16:28468881 - 28498959 on Build GRCh38 Gain CLN3 APOBR

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