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See other CBARP CNV Assays ›
Gene Symbol
CBARP
Assay Reference Genome
Location

Chr.19:1228282 on build GRCh38
Cytoband
19p13.3
Assay ID Hs00108572_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 255057

Gene Name:

 CACN beta subunit associated regulatory protein

Gene Aliases:

 BARP, C19orf26, DOS

Location:

 Chr.19:1228287-1238512 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBARP XM_017026555.1 XP_016882044.1
XM_017026556.1 XP_016882045.1
XM_017026557.1 XP_016882046.1
XM_017026558.1 XP_016882047.1

Target Gene Details

Entrez Gene ID:

 6794

Gene Name:

 serine/threonine kinase 11

Gene Aliases:

 LKB1, PJS, hLKB1

Location:

 Chr.19:1205799-1228435 on Build GRCh38

Assay Gene Location:

 Within Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STK11 NM_000455.4 10 3123 NP_000446.1
XM_011528209.1 11 2759 XP_011526511.1
BC019334.1 10 2279 AAH19334.1
BM993274.1 1 172
BU739451.1 1 167

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss POLR2E ATP5D GPX4 EFNA2 MIDN CIRBP ABCA7 ARHGAP45 CIRBP-AS1 C19orf24 LOC102725180 SBNO2 CBARP STK11
nsv578268 Chr.19:1221162 - 1250886 on Build GRCh38 Loss ATP5D MIDN CBARP STK11
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion POLR2E ATP5D GPX4 EFNA2 MIDN CIRBP ABCA7 ARHGAP45 CIRBP-AS1 C19orf24 CNN2 LOC102725180 SBNO2 CBARP STK11
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain POLR2E ARID3A ATP5D GPX4 EFNA2 MIDN CIRBP LOC105372235 GRIN3B KISS1R R3HDM4 ABCA7 ARHGAP45 TMEM259 CIRBP-AS1 C19orf24 RNU6-9 CNN2 LOC102725180 RNU6-2 SBNO2 CBARP STK11 WDR18
nsv470104 Chr.19:1170446 - 1325151 on Build GRCh38 Loss CIRBP-AS1 C19orf24 ATP5D EFNA2 MIDN CIRBP LOC102725180 SBNO2 CBARP STK11
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion POLR2E GPX4 CIRBP LOC105372235 GRIN3B ABCA7 ARHGAP45 TMEM259 RNU6-9 RNU6-2 CBARP WDR18 ARID3A ATP5D MED16 EFNA2 MIDN KISS1R R3HDM4 CIRBP-AS1 C19orf24 CNN2 LOC102725180 SBNO2 STK11
dgv6196n54 Chr.19:1222317 - 1245701 on Build GRCh38 Loss ATP5D CBARP STK11
nsv953941 Chr.19:1205602 - 1322401 on Build GRCh38 Deletion CIRBP-AS1 C19orf24 ATP5D EFNA2 MIDN CIRBP CBARP STK11
nsv1060536 Chr.19:1228266 - 1329640 on Build GRCh38 Gain CIRBP-AS1 C19orf24 ATP5D EFNA2 MIDN CIRBP CBARP STK11
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain POLR2E ATP5D GPX4 EFNA2 MIDN CIRBP ARHGAP45 CIRBP-AS1 C19orf24 LOC102725180 SBNO2 CBARP STK11
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss POLR2E GPX4 MUM1 CIRBP LOC105372235 GRIN3B C19orf25 DAZAP1 ABCA7 RPS15 ARHGAP45 TMEM259 PLK5 APC2 RNU6-2 CBARP WDR18 PCSK4 ARID3A ATP5D REEP6 EFNA2 MIDN ADAMTSL5 CIRBP-AS1 C19orf24 NDUFS7 GAMT CNN2 LOC102725180 SBNO2 STK11
nsv828368 Chr.19:1223051 - 1274100 on Build GRCh38 Gain CIRBP-AS1 ATP5D MIDN CIRBP CBARP STK11

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More Information


Additional Information:

For this assay, SNP(s) [rs111773256] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

voltage-gated ion channel

Gene Ontology Categories:

Function(s) Process(es)


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