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See other CLN3 CNV Assays ›
Gene Symbol
CLN3
Assay Reference Genome
Location

Chr.16:28491880 on build GRCh38
Cytoband
16p12.1
Assay ID Hs00124149_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 1201

Gene Name:

 CLN3, battenin

Gene Aliases:

 BTS, JNCL

Location:

 Chr.16:28466653-28492302 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLN3 NM_000086.2 1 203 NP_000077.1
NM_001042432.1 NP_001035897.1
NM_001286104.1 NP_001273033.1
NM_001286105.1 1 203 NP_001273034.1
NM_001286109.1 1 203 NP_001273038.1
NM_001286110.1 1 203 NP_001273039.1
AF015594.1 AAD01556.1
AF015595.1 AAD01557.1
AF015598.1 AAD01560.1
AF015600.1 AAD01562.1
AF015601.1 AAD01563.1
AK090709.1
AK294070.1 1 126
AK294250.1
AK295500.1
AK297690.1 1 145
AK302027.1
AK302138.1
AK313002.1
BC002394.2 AAH02394.1
BC004433.1 AAH04433.1
BC111068.1 1 133 AAI11069.1
BP252176.1
DA552461.1
DA703317.1
DA869025.1 1 170
DB101039.1
U32680.1 AAB51075.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion SGF29 APOBR IL27 SULT1A1 SULT1A2 NUPR1 CLN3
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss SGF29 APOBR TUFM NFATC2IP NPIPB6 MIR4721 MIR4517 LAT NPIPB9 CLN3 SH2B1 SPNS1 LOC101928215 MIR6862-2 ATP2A1-AS1 NPIP SULT1A2 NUPR1 IL27 SULT1A1 XPO6 RABEP2 NPIPB8 EIF3CL CD19 ATP2A1 SBK1 RRN3P2 ATXN2L EIF3C MIR6862-1
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain SGF29 APOBR TUFM NFATC2IP MIR4721 MIR4517 LAT NPIPB9 CLN3 SH2B1 SPNS1 LOC101928215 MIR6862-2 ATP2A1-AS1 NPIP SULT1A2 NUPR1 IL27 SULT1A1 RABEP2 NPIPB8 EIF3CL CD19 ATP2A1 RRN3P2 ATXN2L LOC107984832 EIF3C MIR6862-1
nsv833180 Chr.16:28346157 - 28574165 on Build GRCh38 Loss SGF29 APOBR IL27 NPIPB6 MIR6862-1 EIF3CL NUPR1 CLN3
nsv9415 Chr.16:28468881 - 28498959 on Build GRCh38 Gain APOBR CLN3

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