Hs00127894_cn

• Gene Symbol: KRT13
• Assay Reference Genome Location: Chr.17:41503714 on build GRCh38
• Cytoband: 17q21.2

Target Gene Details

• Entrez Gene ID: 3860
• Gene Name: keratin 13
• Gene Aliases: CK13, K13, WSN2
• Location: Chr.17:41500981-41505613 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
KRT13	NM_002274.3			NP_002265.2
	NM_153490.2			NP_705694.2
	AK092276.1			BAC03847.1
	AK223051.1			BAD96771.1
	AK223077.1			BAD96797.1
	AK290244.1
	AK296806.1
	AK309752.1
	BC002661.2
	BC077718.1
	BC126184.1
	BC136494.1
	DR422220.1
	X14640.1			CAA32786.1
	X52426.1			CAA36673.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv34903	Chr.17:41489914 - 41632423 on Build GRCh38	Gain	KRT9 KRT17 MIR6510 KRT42P KRT14 KRT13 KRT19 LINC00974 KRT15 KRT16
esv3640588	Chr.17:41488647 - 41572595 on Build GRCh38	Gain	KRT9 MIR6510 KRT13 KRT19 LINC00974 KRT15 KRT36
nsv510711	Chr.17:41455775 - 41574964 on Build GRCh38	Deletion	KRT9 KRT35 MIR6510 KRT13 KRT19 LINC00974 KRT32 KRT15 KRT36
nsv524606	Chr.17:41483526 - 41510277 on Build GRCh38	Loss	KRT13 KRT36
nsv827992	Chr.17:41488451 - 41630341 on Build GRCh38	Gain	KRT9 KRT17 MIR6510 KRT42P KRT14 KRT13 KRT19 LINC00974 KRT15 KRT16 KRT36
nsv483014	Chr.17:41339595 - 41514244 on Build GRCh38	Loss	LOC100505782 KRT35 KRT34 KRT33B KRT38 KRT31 KRT33A KRT37 KRT13 KRT32 KRT15 KRT36
nsv9555	Chr.17:41487965 - 41573526 on Build GRCh38	Gain	KRT9 MIR6510 KRT13 KRT19 LINC00974 KRT15 KRT36
nsv526466	Chr.17:41480992 - 41534847 on Build GRCh38	Gain	KRT35 MIR6510 KRT13 KRT19 KRT15 KRT36
esv2758690	Chr.17:41145123 - 41740591 on Build GRCh38	Gain+Loss	KRTAP4-4 LINC00974 KRT32 KRTAP9-1 KRTAP17-1 KRT16 KRT35 KRT33B KRT17 GAST KRTAP16-1 KRT42P KRT14 KRT19 KRTAP9-8 LOC100505782 KRTAP4-1 KRT9 KRTAP29-1 KRT34 KRT38 KRTAP9-3 KRTAP9-9 KRTAP9-2 MIR6510 KRT13 KRTAP9-6 KRT15 KRTAP4-5 KRTAP9-7 KRT31 KRT33A KRTAP4-3 EIF1 KRT37 KRTAP4-2 HAP1 KRTAP9-4 KRT36

More Information

Additional Information:

For this assay, SNP(s) [rs73986307] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytoskeleton organization
response to radiation
tongue morphogenesis
cellular response to retinoic acid

Function(s)

structural molecule activity