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Gene Symbol
SPG7
Assay Reference Genome
Location

Chr.16:89524011 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00138457_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6687

Gene Name:

 SPG7, paraplegin matrix AAA peptidase subunit

Gene Aliases:

 CAR, CMAR, PGN, SPG5C

Location:

 Chr.16:89508379-89557768 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPG7 NM_003119.3 NP_003110.1
NM_199367.2 NP_955399.1
XM_005256321.4 XP_005256378.1
XM_006721264.3 XP_006721327.1
XM_017023597.1 XP_016879086.1
XM_017023598.1 XP_016879087.1
XM_017023599.1 XP_016879088.1
AF090912.1 1 1292 AAF24033.1
BC035929.2 AAH35929.1
BC036104.1 AAH36104.1
BI827568.1
HY006239.1
Y16610.1 CAA76314.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3639586 Chr.16:89514722 - 89527655 on Build GRCh38 Gain SPG7
esv3639584 Chr.16:89504768 - 89531669 on Build GRCh38 Loss SPG7
esv2758670 Chr.16:89376499 - 89585740 on Build GRCh38 Gain LOC101927817 SNORD68 RPL13 ANKRD11 CPNE7 SPG7
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC100287036 TUBB3 ZNF778 VPS9D1-AS1 DBNDD1 SPATA33 TUBB8P7 SPATA2L DEF8 ANKRD11 MC1R ZNF276 LOC107984817 SPIRE2 SPG7 PRDM7 AFG3L1P GAS8 TCF25 LOC105371419 CHMP1A VPS9D1 CDK10 URAHP SNORD68 CENPBD1 CPNE7 LOC101927817 FAM157C LOC105371414 RPL13 FANCA GAS8-AS1 DPEP1
nsv471118 Chr.16:89446826 - 89600929 on Build GRCh38 Gain LOC101927817 SNORD68 RPL13 ANKRD11 CPNE7 SPG7
nsv1063483 Chr.16:89347250 - 89661187 on Build GRCh38 Gain LOC101927817 SPATA33 SNORD68 RPL13 ANKRD11 CPNE7 SPG7 CHMP1A DPEP1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100287036 LOC339059 ZNF778 DBNDD1 SNAI3-AS1 SPATA2L DEF8 ANKRD11 MC1R ZNF276 SPG7 PRDM7 AFG3L1P RNF166 TCF25 GALNS IL17C CDK10 CENPBD1 CPNE7 LOC100129697 LOC101927817 LOC105371414 LOC100289580 SLC22A31 RPL13 FANCA GAS8-AS1 SNAI3 TUBB3 LOC105371409 LOC107987238 LOC101927793 VPS9D1-AS1 SPATA33 TUBB8P7 MVD TRAPPC2L LOC400558 LOC107984817 SPIRE2 PIEZO1 CTU2 CYBA GAS8 APRT LOC105371419 CHMP1A PABPN1L LINC00304 VPS9D1 CBFA2T3 URAHP SNORD68 ACSF3 CDH15 FAM157C CDT1 MIR4722 DPEP1
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion VPS9D1 CDK10 VPS9D1-AS1 SPATA33 SNORD68 SPATA2L CPNE7 ZNF276 SPG7 RPL13 FANCA CHMP1A DPEP1

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