Hs00140065_cn

• Gene Symbol: NCBP3
• Assay Reference Genome Location: Chr.17:3813252 on build GRCh38
• Cytoband: 17p13.2

Target Gene Details

• Entrez Gene ID: 55421
• Gene Name: nuclear cap binding subunit 3
• Gene Aliases: C17orf85, ELG, HSA277841
• Location: Chr.17:3806748-3846251 on Build GRCh38
• Assay Gene Location: Overlaps Intron 14 - Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NCBP3	NM_001114118.2			NP_001107590.1
	XM_005256717.2			XP_005256774.1
	XM_006721556.2			XP_006721619.1
	XM_011523954.2			XP_011522256.1
	XM_011523955.2			XP_011522257.1
	XM_017024826.1			XP_016880315.1
	XM_017024827.1			XP_016880316.1
	XM_017024828.1			XP_016880317.1
	XM_017024829.1			XP_016880318.1
	AJ277841.1			CAB91001.1
	AK125048.1
	AK223470.1			BAD97190.1
	BC010707.1			AAH10707.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1065489	Chr.17:2631416 - 3948349 on Build GRCh38	Gain	OR1D4 CTNS NCBP3 OR3A1 PAFAH1B1 RAP1GAP2 OR1E1 TRPV1 CLUH CCDC92B GSG2 P2RX5-TAX1BP3 OR1A1 CAMKK1 P2RX5 ITGAE LOC105371591 MIR6776 LOC105371592 ATP2A3 ASPA TAX1BP3 OR1D5 SPATA22 EMC6 OR3A2 OR1D2 OR1E2 SHPK OR3A4P P2RX1 LOC101927911 MIR1253 OR1A2 OR3A3 TRPV3 OR1G1
esv2761940	Chr.17:3767589 - 3997617 on Build GRCh38	Gain	P2RX1 NCBP3 CAMKK1 ITGAE ATP2A3
nsv469791	Chr.17:3700760 - 3885899 on Build GRCh38	Loss	GSG2 NCBP3 CAMKK1 ITGAE
nsv1055740	Chr.17:3381841 - 3890153 on Build GRCh38	Gain	SPATA22 CTNS NCBP3 EMC6 OR3A2 OR1E2 OR1E1 TRPV1 SHPK GSG2 OR3A3 P2RX5-TAX1BP3 CAMKK1 P2RX5 ITGAE ASPA TAX1BP3 TRPV3

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

7-methylguanosine mRNA capping
mRNA transport
defense response to virus

Function(s)

nucleotide binding
RNA 7-methylguanosine cap binding
mRNA binding
protein binding
poly(A) RNA binding