Hs00140569_cn

• Gene Symbol: NFATC2IP
• Assay Reference Genome Location: Chr.16:28958838 on build GRCh38
• Cytoband: 16p11.2

Target Gene Details

• Entrez Gene ID: 84901
• Gene Name: nuclear factor of activated T-cells 2 interacting protein
• Gene Aliases: ESC2, NIP45, RAD60
• Location: Chr.16:28950988-28967097 on Build GRCh38
• Assay Gene Location: Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFATC2IP	NM_032815.3			NP_116204.3
	AF458593.1			AAM49721.1
	AK027545.1			BAB55189.1
	AK074761.1			BAC11189.1
	AK297333.1
	AK304606.1
	AK316535.1
	BC018311.1
	BC021551.1
	BC068007.1			AAH68007.1
	BC080628.1			AAH80628.1
	BC101741.1			AAI01742.1
	BC112182.1			AAI12183.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4987n54	Chr.16:28824884 - 29032129 on Build GRCh38	Gain	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
esv3892826	Chr.16:28814728 - 29032129 on Build GRCh38	Gain+Loss	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	MIR4517 CLN3 LAT EIF3C MIR6862-2 LOC101928215 SH2B1 EIF3CL SBK1 MIR6862-1 NPIPB8 NFATC2IP SULT1A1 NPIPB9 MIR4721 SPNS1 SULT1A2 APOBR ATP2A1 NPIPB6 ATP2A1-AS1 CD19 XPO6 RRN3P2 TUFM SGF29 ATXN2L NUPR1 NPIP RABEP2 IL27
nsv518648	Chr.16:28826194 - 29032129 on Build GRCh38	Loss	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	MIR4517 CLN3 LAT EIF3C MIR6862-2 LOC101928215 SH2B1 EIF3CL MIR6862-1 NPIPB8 NFATC2IP SULT1A1 NPIPB9 MIR4721 SPNS1 SULT1A2 APOBR ATP2A1 ATP2A1-AS1 CD19 LOC107984832 RRN3P2 TUFM SGF29 ATXN2L NUPR1 NPIP RABEP2 IL27
dgv2831n100	Chr.16:28812594 - 29032542 on Build GRCh38	Gain	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
esv3570454	Chr.16:28799004 - 29032129 on Build GRCh38	Gain	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
nsv457480	Chr.16:28958159 - 29032129 on Build GRCh38	Gain	MIR4517 NFATC2IP LAT SPNS1
nsv571805	Chr.16:28824174 - 29032129 on Build GRCh38	Loss	MIR4517 SH2B1 ATP2A1 TUFM NFATC2IP LAT ATXN2L MIR4721 ATP2A1-AS1 SPNS1 CD19 RABEP2
dgv2830n100	Chr.16:28620264 - 29032542 on Build GRCh38	Gain	MIR4517 ATP2A1 LAT EIF3C MIR6862-2 ATP2A1-AS1 CD19 SH2B1 TUFM NPIPB8 NFATC2IP SULT1A1 NPIPB9 ATXN2L MIR4721 SPNS1 RABEP2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokine production
protein sumoylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

protein tag