Hs00163221_cn

• Gene Symbol: LOC101928069
• Assay Reference Genome Location: Chr.11:66477220 on build GRCh38
• Cytoband: 11q13.2

Target Gene Details

• Entrez Gene ID: 101928069
• Gene Name: uncharacterized LOC101928069
• Gene Aliases: -
• Location: Chr.11:66473490-66480249 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101928069	NR_120586.1
	BQ223044.1

Target Gene Details

• Entrez Gene ID: 246330
• Gene Name: pellino E3 ubiquitin protein ligase family member 3
• Gene Aliases: -
• Location: Chr.11:66466327-66477337 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PELI3	NM_001098510.1	7	2555	NP_001091980.1
	NM_001243135.1	7	2394	NP_001230064.1
	NM_001243136.1	6	2402	NP_001230065.1
	NM_145065.2	8	2627	NP_659502.2
	XM_011544884.2	8	2630	XP_011543186.1
	XM_017017465.1	6	2379	XP_016872954.1
	AK074201.1	8	2565	BAB85015.1
	AK075253.1	4	2067	BAC11499.1
	AK094060.1	7	2394	BAC04275.1
	AL834395.1	8	2574	CAD39057.1
	BC025723.1	7	2476	AAH25723.1
	BC127759.1	2	1713

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522277	Chr.11:66466552 - 66726354 on Build GRCh38	Loss	PELI3 CTSF RBM4 CCDC87 ZDHHC24 BBS1 LOC101928069 DPP3 RBM14-RBM4 CCS SPTBN2 ACTN3 RBM14 RBM4B
nsv832193	Chr.11:66352868 - 66511334 on Build GRCh38	Loss	PELI3 BBS1 SLC29A2 LOC101928069 DPP3 NPAS4 LOC102724064 MRPL11

More Information

Additional Information:

For this assay, SNP(s) [rs78746416] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ubiquitin-protein ligase, protein modifying enzyme

Gene Ontology Categories:

Process(es)

Toll signaling pathway
negative regulation of tumor necrosis factor-mediated signaling pathway
protein ubiquitination
negative regulation of extrinsic apoptotic signaling pathway

Function(s)

protein binding
ligase activity