Hs00174649_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137039833 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3			NP_056207.3
	AF272357.1			AAF76225.1
	AF283247.1			AAF82603.1
	AF285836.1			AAK27328.1
	AF327349.1			AAL56010.1
	AK054950.1
	AK074793.1			BAC11212.1
	AK225091.1
	AL050221.1			CAB43321.1
	BC004217.2			AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	C9orf142 ABCA2 FUT7 DPP7 UAP1L1 PRR31 CLIC3 PTGDS MAN1B1 NPDC1 LRRC26 TMEM210 ENTPD2 LOC101930307 MAN1B1-AS1 GRIN1 LCNL1 SAPCD2 C9orf139 MIR3621
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	CCDC183 NDOR1 SSNA1 C9orf172 RABL6 CCDC183-AS1 ENTPD2 SLC34A3 ANAPC2 NELFB TRAF2 SAPCD2 MIR3621 EXD3 ABCA2 FUT7 DPP7 UAP1L1 TPRN PTGDS MAMDC4 MIR4479 NPDC1 FAM166A FBXW5 TMEM203 GRIN1 LCNL1 C9orf173-AS1 PHPT1 C8G PRR31 MAN1B1 NSMF MIR4292 LCN12 LOC101930307 RNF224 MAN1B1-AS1 TUBB4B C9orf139 NRARP C9orf142 CLIC3 PNPLA7 EDF1 LRRC26 CYSRT1 NOXA1 TMEM210 ENTPD8 TOR4A RNF208 MIR7114 STPG3
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C9orf142 ABCA2 FUT7 DPP7 C8G UAP1L1 PRR31 CLIC3 PTGDS MAN1B1 NPDC1 LCN12 ENTPD2 LOC101930307 MAN1B1-AS1 LCNL1 SAPCD2 C9orf139
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4673 CCDC183 SNORA17B C9orf172 RABL6 C9orf163 SDCCAG3 NOTCH1 LCN6 CCDC183-AS1 ENTPD2 SNORA17A DNLZ CARD9 TRAF2 SAPCD2 MIR3621 LOC100128593 ABCA2 FUT7 DPP7 UAP1L1 AGPAT2 PTGDS MAMDC4 MIR4479 NPDC1 HSPC324 LCN8 PMPCA LINC01451 FBXW5 MIR6722 GRIN1 LCNL1 SNHG7 PHPT1 LCN10 C8G PRR31 SEC16A MAN1B1 LCN15 INPP5E MIR4292 LCN12 LOC101930307 MAN1B1-AS1 MIR4674 MIR126 C9orf139 C9orf142 NALT1 CLIC3 FAM69B EDF1 LRRC26 TMEM210 TMEM141 EGFL7 SNAPC4
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	DPP7 UAP1L1 MAN1B1 NPDC1 LRRC26 TMEM210 ENTPD2 LOC101930307 MAN1B1-AS1 GRIN1 SAPCD2 C9orf139 MIR3621
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	FUT7 SSNA1 DPP7 UAP1L1 MAN1B1 NPDC1 LRRC26 TMEM210 ENTPD2 LOC101930307 MAN1B1-AS1 ANAPC2 GRIN1 SAPCD2 C9orf139 MIR3621
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 FUT7 ENTPD2 C9orf139 NPDC1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CCDC183 NDOR1 SSNA1 SNORA17B C9orf172 RABL6 LCN6 CCDC183-AS1 ENTPD2 SLC34A3 SNORA17A ANAPC2 NELFB TRAF2 SAPCD2 MIR3621 LOC100128593 EXD3 ABCA2 FUT7 DPP7 UAP1L1 TPRN AGPAT2 PTGDS MAMDC4 MIR4479 NPDC1 FAM166A HSPC324 LCN8 LINC01451 FBXW5 MIR6722 TMEM203 GRIN1 LCNL1 C9orf173-AS1 SNHG7 PHPT1 LCN10 C8G PRR31 MAN1B1 LCN15 MIR4292 LCN12 LOC101930307 RNF224 MAN1B1-AS1 TUBB4B MIR126 C9orf139 NRARP C9orf142 CLIC3 FAM69B EDF1 LRRC26 CYSRT1 TMEM210 TMEM141 EGFL7 TOR4A RNF208 STPG3

More Information

Additional Information:

For this assay, SNP(s) [rs150962465] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding