Name: [Hs00189126_cn] [PRPF6]
Creator: Thermo Fisher Scientific
Keywords: [PRPF6] Assay, [pre-mRNA processing factor 6] Assay

Genomic Map

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Assay Details

Entrez Gene ID:	24148
Gene Name:	pre-mRNA processing factor 6
Gene Aliases:	ANT-1, ANT1, C20orf14, Prp6, RP60, SNRNP102, TOM, U5-102K, hPrp6
Location:	Chr.20:63981069-64033100 on Build GRCh38
Assay Gene Location:	Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PRPF6	NM_012469.3	1	129	NP_036601.2
	XM_006723769.2	1	138	XP_006723832.1
	AB019219.1	1	43	BAA37140.1
	AF026031.1	1	60	AAD01798.1
	AF221842.1	1	66	AAF66128.1
	AK001554.1	1	72
	AK225993.1	1	83
	AK314310.1	1	53
	BC001666.2			AAH01666.1
	BI562505.1	1	141
	BP366197.1	1	129

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9830	Chr.20:63961342 - 63981916 on Build GRCh38	Gain	SAMD10 PRPF6 ZNF512B
nsv509784	Chr.20:63824382 - 63983325 on Build GRCh38	Insertion	SAMD10 MIR941-1 UCKL1 MIR1914 MIR941-3 ZNF512B MIR941-5 PRPF6 MIR941-4 DNAJC5 C20orf181 MIR941-2 ABHD16B TPD52L2 ZBTB46 UCKL1-AS1 MIR647
nsv586703	Chr.20:63964886 - 64095388 on Build GRCh38	Loss	SAMD10 PRPF6 TCEA2 OPRL1 RGS19 LKAAEAR1 ZNF512B LINC00176 MIR6813 SOX18
nsv428381	Chr.20:63583375 - 64334167 on Build GRCh38	Gain+Loss	TNFRSF6B OPRL1 UCKL1 MIR941-3 ZBTB46-AS1 MIR941-5 MIR941-4 LINC00266-1 RGS19 DNAJC5 LINC00176 TPD52L2 RTEL1-TNFRSF6B MIR647 PCMTD2 SAMD10 TCEA2 LOC100505771 MIR941-1 MIR1914 LKAAEAR1 ZNF512B ZGPAT MIR6813 ARFRP1 SLC2A4RG NPBWR2 PRPF6 STMN3 RTEL1 C20orf181 MIR941-2 ABHD16B MYT1 GMEB2 ZBTB46 UCKL1-AS1 LIME1 SOX18
nsv469773	Chr.20:63845428 - 64039312 on Build GRCh38	Gain	SAMD10 MIR941-1 UCKL1 MIR1914 MIR941-3 ZNF512B MIR941-5 PRPF6 MIR941-4 DNAJC5 C20orf181 LINC00176 MIR941-2 ABHD16B TPD52L2 UCKL1-AS1 MIR647
nsv1160691	Chr.20:63943650 - 64055199 on Build GRCh38	Deletion	SAMD10 PRPF6 TCEA2 UCKL1 ZNF512B LINC00176 UCKL1-AS1 SOX18