Hs00203940_cn

• Gene Symbol: TAF6
• Assay Reference Genome Location: Chr.7:100107576 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 6878
• Gene Name: TATA-box binding protein associated factor 6
• Gene Aliases: MGC:8964, TAF(II)70, TAF(II)80, TAF2E, TAFII-70, TAFII-80, TAFII70, TAFII80, TAFII85
• Location: Chr.7:100107070-100119858 on Build GRCh38
• Assay Gene Location: Overlaps Intron 17 - Exon 18

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TAF6	NM_001190415.1			NP_001177344.1
	NM_005641.3			NP_005632.1
	NM_139315.2			NP_647476.1
	NR_033792.1
	XM_006716100.2			XP_006716163.1
	XM_006716101.2			XP_006716164.1
	XM_006716102.2			XP_006716165.1
	XM_011516542.2			XP_011514844.1
	XM_011516543.2			XP_011514845.1
	XM_017012568.1			XP_016868057.1
	AK097781.1
	AK300005.1
	AK314428.1
	AK315077.1
	BC018115.1			AAH18115.1
	CR627390.1			CAH10485.1
	CX782724.1
	L25444.1			AAA63643.1
	U31659.1			AAA84390.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv607931	Chr.7:100067194 - 100198523 on Build GRCh38	Loss	LAMTOR4 GPC2 MIR93 MIR25 C7orf43 MIR4658 GATS GAL3ST4 COPS6 ZNF3 MBLAC1 MCM7 TAF6 CNPY4 STAG3 AP4M1 MIR106B
nsv469687	Chr.7:99974920 - 100157518 on Build GRCh38	Loss	LAMTOR4 AZGP1P1 AZGP1 MIR93 ZKSCAN1 MIR25 C7orf43 MIR4658 COPS6 ZNF3 MBLAC1 MCM7 TAF6 CNPY4 AP4M1 MIR106B ZSCAN21
nsv951384	Chr.7:100100678 - 100114877 on Build GRCh38	Deletion	MCM7 TAF6 AP4M1
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	C7orf61 GPC2 ZASP SAP25 PPP1R35 PVRIG MIR4653 PILRA TSC22D4 C7orf43 ZNHIT1 ACHE STAG3L5P MIR4658 NAT16 TRIM56 GAL3ST4 PLOD3 NYAP1 TAF6 MOSPD3 STAG3L5P-PVRIG2P-PILRB PCOLCE ZSCAN21 LAMTOR4 AZGP1 ZKSCAN1 LOC105375429 MIR25 ACTL6B TFR2 FBXO24 SRRT SLC12A9 ZNF3 UFSP1 ZCWPW1 GIGYF1 MIR106B LRCH4 FIS1 SERPINE1 VGF AZGP1P1 PILRB MIR6840 ZAN AGFG2 COPS6 MUC12 MIR6875 MUC17 GNB2 MBLAC1 MUC3A MCM7 PCOLCE-AS1 CNPY4 AP4M1 SPDYE3 MIR93 MOGAT3 EPHB4 CLDN15 TRIP6 PMS2P1 GATS POP7 AP1S1 MEPCE STAG3 EPO PVRIG2P LOC102724094

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Process(es)

DNA-templated transcription, initiation
transcription from RNA polymerase II promoter
transcription initiation from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
snRNA transcription from RNA polymerase II promoter
negative regulation of cell cycle
regulation of sequence-specific DNA binding transcription factor activity
regulation of signal transduction by p53 class mediator

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
protein heterodimerization activity