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See other HLA-E CNV Assays ›
Gene Symbol
HLA-E
Assay Reference Genome
Location

Chr.6:30490395 on build GRCh38
Cytoband
6p22.1
Assay ID Hs00207518_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3133

Gene Name:

 major histocompatibility complex, class I, E

Gene Aliases:

 EA1.2, EA2.1, HLA-6.2, MHC, QA1

Location:

 Chr.6:30489406-30494205 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-E NM_005516.5 3 616 NP_005507.3
XM_017010807.1 2 628 XP_016866296.1
XM_017010808.1 2 628 XP_016866297.1
XM_017010809.1 3 513 XP_016866298.1
AB209870.1 3 483 BAD93107.1
AJ293263.1 3 490 CAC07212.1
AJ293264.1 3 490 CAC07213.1
AK098434.1 3 513
AK225048.1 3 510
AK292391.1 3 568
AK296822.1 2 640
AK298695.1
AK300906.1 3 436
AK301125.1 3 291
AK314411.1 3 510
AK316327.1 3 441
AY216681.1 3 490 AAO37688.1
AY221103.1 3 490 AAO34408.1
BC002578.2 3 504 AAH02578.1
BC004297.1 3 488 AAH04297.1
BC040479.1 3 510 AAH40479.1
BM791769.1 3 555
BX538084.1 CAD98008.1
DA832616.1 3 616
L78455.1 2 427
L78934.1 2 426
M20022.1 3 497 AAA52655.1
M31183.1 3 462 AAA57146.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion PSORS1C3 OR12D2 MIR4640 HCG4B ZFP57 MOG HCG20 OR5V1 OR14J1 HCG9 SNORD32B IER3 LINC01015 DDR1 GNL1 LOC101929006 DPCR1 GTF2H4 ZNRD1ASP NRM PPP1R11 HLA-J TRIM39-RPP21 HLA-L PPP1R18 TRIM10 UBD MDC1-AS1 OR2H2 TRIM26 MDC1 CDSN PRR3 DHX16 HLA-B HLA-A OR12D3 MUC22 ZNRD1 GABBR1 MIR6891 IFITM4P TRIM31 PSORS1C2 POU5F1 HCG27 HLA-F CCHCR1 OR10C1 C6orf136 HCG17 HLA-K LOC554223 HLA-G HLA-E LINC00243 HCG4 MAS1L ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HLA-H HCG22 HLA-C OR11A1 FLOT1 TRIM15 OR2H1 C6orf15 LOC105375014 HLA-F-AS1 TRIM39 MICA MRPS18B TUBB HCG18 MIR877 OR2J2 SFTA2 RNF39 TRIM31-AS1 TRIM40 TCF19 PSORS1C1 HCG8 RPP21
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss PSORS1C3 MIR4640 HLA-E LINC00243 HCG20 ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HCG22 HLA-C FLOT1 IER3 DDR1 GNL1 C6orf15 DPCR1 GTF2H4 NRM LOC105375014 PPP1R18 MDC1-AS1 MRPS18B MDC1 CDSN PRR3 TUBB DHX16 MUC22 MIR877 SFTA2 PSORS1C2 POU5F1 TCF19 HCG27 PSORS1C1 CCHCR1 C6orf136
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion ZNF311 PSORS1C3 OR12D2 MIR4640 HCG16 HCG4B ZFP57 MOG HCG20 OR5V1 OR14J1 TRIM27 HCG9 SNORD32B IER3 LINC01015 HCG14 DDR1 GNL1 LOC101929006 DPCR1 GTF2H4 ZNRD1ASP NRM PPP1R11 HLA-J TRIM39-RPP21 HLA-L PPP1R18 TRIM10 UBD MDC1-AS1 OR2H2 TRIM26 MDC1 CDSN PRR3 DHX16 HLA-A OR12D3 MUC22 ZNRD1 GABBR1 IFITM4P TRIM31 PSORS1C2 POU5F1 OR2W1 HCG27 HLA-F CCHCR1 OR10C1 C6orf136 HCG17 HLA-K LOC554223 HLA-G HLA-E LINC00243 HCG4 MAS1L ABCF1 ATAT1 LINC01556 OR2B3 VARS2 MUC21 PPP1R10 HLA-H HCG22 OR11A1 LINC01623 FLOT1 TRIM15 OR2H1 C6orf15 LOC105375014 OR2J3 HLA-F-AS1 TRIM39 MRPS18B TUBB HCG18 MIR877 OR2J2 SFTA2 RNF39 TRIM31-AS1 TRIM40 LOC100129636 TCF19 PSORS1C1 HCG8 LINC00533 RPP21
nsv970103 Chr.6:30484678 - 30492295 on Build GRCh38 Duplication HLA-E
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion PSORS1C3 MIR4640 HCG4B HCG20 HCG9 IER3 DDR1 GNL1 DPCR1 GTF2H4 ZNRD1ASP NRM PPP1R11 HLA-J TRIM39-RPP21 HLA-L PPP1R18 TRIM10 MDC1-AS1 TRIM26 MDC1 CDSN PRR3 DHX16 HLA-A MUC22 ZNRD1 IFITM4P TRIM31 PSORS1C2 POU5F1 HCG27 HLA-F CCHCR1 C6orf136 HCG17 HLA-K LOC554223 HLA-G HLA-E LINC00243 HCG4 ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HLA-H HCG22 HLA-C FLOT1 TRIM15 C6orf15 LOC105375014 HLA-F-AS1 TRIM39 MRPS18B TUBB HCG18 MIR877 SFTA2 RNF39 TRIM31-AS1 TRIM40 TCF19 PSORS1C1 HCG8 RPP21
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion PSORS1C3 MIR4640 HLA-E LINC00243 HCG20 ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HCG22 HLA-C FLOT1 IER3 DDR1 GNL1 C6orf15 DPCR1 GTF2H4 NRM LOC105375014 PPP1R18 MDC1-AS1 MRPS18B MDC1 CDSN PRR3 TUBB DHX16 MUC22 MIR877 SFTA2 PSORS1C2 POU5F1 TCF19 HCG27 PSORS1C1 CCHCR1 C6orf136
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss PSORS1C3 MIR4640 HCG4B HCG20 HCG9 IER3 DDR1 GNL1 DPCR1 GTF2H4 ZNRD1ASP NRM PPP1R11 HLA-J TRIM39-RPP21 HLA-L PPP1R18 TRIM10 MDC1-AS1 TRIM26 MDC1 CDSN PRR3 DHX16 HLA-A MUC22 ZNRD1 TRIM31 PSORS1C2 POU5F1 HCG27 CCHCR1 C6orf136 HCG17 HLA-K HLA-E LINC00243 ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HLA-H HCG22 HLA-C FLOT1 TRIM15 C6orf15 LOC105375014 TRIM39 MRPS18B TUBB HCG18 MIR877 SFTA2 RNF39 TRIM31-AS1 TRIM40 TCF19 PSORS1C1 HCG8 RPP21
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PSORS1C3 MIR4640 HCG20 IER3 DDR1 GNL1 DPCR1 GTF2H4 HCG26 ZNRD1ASP NRM PPP1R11 HLA-J TRIM39-RPP21 HLA-L PPP1R18 TRIM10 MDC1-AS1 TRIM26 MDC1 CDSN PRR3 DHX16 HLA-B MUC22 ZNRD1 MIR6891 TRIM31 PSORS1C2 POU5F1 HCG27 CCHCR1 C6orf136 HCG17 HLA-E LINC00243 ABCF1 ATAT1 VARS2 MUC21 PPP1R10 HCG22 HLA-C FLOT1 TRIM15 C6orf15 LOC105375014 TRIM39 MICA MRPS18B TUBB HCG18 HCP5 MIR877 SFTA2 RNF39 TRIM31-AS1 LOC102725068 TRIM40 TCF19 PSORS1C1 HCG8 RPP21

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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