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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:764150 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00217196_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 7 - Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain GNG13 RPUSD1 PRR25 CHTF18 MIR662 MSLN
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RPUSD1 HBZ SNRNP25 SOX8 MIR6859-4 MSRB1 TELO2 CRAMP1 ABCA3 MIR1225 LOC100134368 TPSD1 GNG13 MRPS34 MIR5587 RAB26 POLR3K NTHL1 RHBDL1 LOC105371047 METRN METTL26 TPSAB1 UBE2I PDIA2 PIGQ MIR6767 KCTD5 MSLN RAB11FIP3 TSC2 TBC1D24 CCDC78 RAB40C NPW ZNF598 LMF1-AS1 IGFALS MCRIP2 PRR25 STUB1 MIR4516 NARFL HBA1 DECR2 HAGHL SYNGR3 SPSB3 ARHGDIG MIR3176 MIR6768 CASKIN1 PKD1 LOC106660606 DDX11L10 WDR24 NME4 MIR3677 ABCA17P ECI1 LOC101929280 SNORA64 MPG FAM173A LOC107987233 NTN3 RGS11 WDR90 IFT140 MIR3177 RHBDF1 SSTR5-AS1 WASIR2 NHLRC4 PRSS29P SNORA10 GNPTG SNHG9 MAPK8IP3 LOC105371046 UNKL BRICD5 LMF1 CCDC154 CCNF TBL3 LOC652276 ATP6V0C WFIKKN1 TRAF7 TPSB2 NUBP2 JMJD8 RNPS1 TMEM204 LOC105371184 LOC105371038 NDUFB10 SLC9A3R2 PTX4 PRSS27 CLCN7 CHTF18 TPSG1 LOC105371045 MIR3178 RPL23AP5 NME3 MRPL28 MEIOB RPL3L HAGH LOC105371049 LOC107984876 MIR662 SNHG19 MIR940 C16orf59 HBA2 DNASE1L2 LOC100287175 CAPN15 C1QTNF8 SNORD60 PGP PDPK1 LOC729652 HN1L FAHD1 BAIAP3 LINC00254 HS3ST6 RNF151 NOXO1 LUC7L RHOT2 MIR6511B1 AXIN1 RPS2 EME2 LINC00235 PRR35 HBM FBXL16 AMDHD2 SSTR5 GFER E4F1 SNORA78 FAM234A HBQ1 NPRL3 MIR4717 TMEM8A C16orf91 FLJ42627 CACNA1H CEMP1 ERVK13-1 MIR3180-5 TSR3 MLST8
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss RPUSD1 MCRIP2 PRR25 STUB1 NARFL LOC100287175 HAGHL CAPN15 WFIKKN1 MIR3176 JMJD8 GNG13 LOC105371184 LOC105371038 MIR5587 WDR24 RHBDL1 METRN METTL26 RHOT2 CHTF18 LOC101929280 PIGQ FAM173A LINC00235 LOC107987233 PRR35 FBXL16 WDR90 MSLN RAB11FIP3 NHLRC4 CCDC78 RAB40C MIR662
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss RPUSD1 MCRIP2 PRR25 STUB1 NARFL LOC100287175 HAGHL CAPN15 WFIKKN1 MIR3176 JMJD8 GNG13 LOC105371184 LOC105371038 MIR5587 WDR24 RHBDL1 METRN METTL26 RHOT2 CHTF18 LOC101929280 PIGQ FAM173A LINC00235 LOC107987233 PRR35 FBXL16 WDR90 MSLN RAB11FIP3 NHLRC4 CCDC78 RAB40C MIR662
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RPUSD1 MCRIP2 PRR25 LMF1 SOX8 STUB1 NARFL LOC100287175 HAGHL CAPN15 WFIKKN1 MIR3176 JMJD8 GNG13 LOC105371184 C1QTNF8 LOC105371038 MIR5587 WDR24 RHBDL1 METRN METTL26 RHOT2 CHTF18 LOC101929280 PIGQ FAM173A LINC00235 LOC107987233 PRR35 FBXL16 SSTR5 WDR90 MSLN RAB11FIP3 SSTR5-AS1 NHLRC4 CCDC78 RAB40C LOC107984876 LMF1-AS1 MIR662
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RPUSD1 MCRIP2 STUB1 NARFL LOC100287175 HAGHL WFIKKN1 JMJD8 GNG13 LOC105371184 LOC105371038 WDR24 RHBDL1 METRN METTL26 RHOT2 CHTF18 LOC101929280 PIGQ FAM173A FBXL16 WDR90 MSLN CCDC78 RAB40C MIR662
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication RPUSD1 MCRIP2 PRR25 STUB1 NARFL LOC100287175 HAGHL CAPN15 WFIKKN1 MIR3176 JMJD8 GNG13 LOC105371184 LOC105371038 MIR5587 WDR24 RHBDL1 METRN METTL26 RHOT2 CHTF18 LOC101929280 PIGQ FAM173A LINC00235 LOC107987233 PRR35 FBXL16 WDR90 MSLN RAB11FIP3 NHLRC4 CCDC78 RAB40C MIR662
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss RPUSD1 RHOT2 MCRIP2 STUB1 NARFL CHTF18 LOC100287175 FAM173A HAGHL FBXL16 WDR90 MSLN JMJD8 GNG13 LOC105371184 CCDC78 LOC105371038 WDR24 RHBDL1 MIR662 METRN
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss GNG13 RPUSD1 PRR25 CHTF18 MIR662 MSLN
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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