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See other GFER CNV Assays ›
Gene Symbol
GFER
Assay Reference Genome
Location

Chr.16:1985959 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00227148_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2671

Gene Name:

 growth factor, augmenter of liver regeneration

Gene Aliases:

 ALR, ERV1, HERV1, HPO, HPO1, HPO2, HSS

Location:

 Chr.16:1984149-1987749 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GFER NM_005262.2 3 619 NP_005253.3
AF124603.1 2 327 AAD17327.1
AF124604.1 3 465 AAD17328.1
AF208342.1 3 309 AAG43494.1
AF306863.1 3 549 AAG38105.1
AY550027.1 3 309 AAS55642.1
BC002429.1 3 555 AAH02429.1
BC028348.2 3 546 AAH28348.2
U31176.1 3 460 AAA96390.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MPG FAM234A MIR5587 MIR662 SPSB3 LOC729652 C16orf91 HBZ TMEM8A IFT140 FBXL16 PIGQ C16orf59 CCDC78 RGS11 CAPN15 C1QTNF8 MIR3176 POLR3K DECR2 TPSG1 HBA1 WDR90 WASIR2 CEMP1 IGFALS RHBDL1 LINC00235 LOC105371045 TBL3 SNORA10 TMEM204 CHTF18 MIR1225 RNF151 TPSB2 ABCA17P LOC105371046 WFIKKN1 ZNF598 NHLRC4 SSTR5 LOC107984876 MIR940 NTHL1 HS3ST6 MRPL28 PRSS29P RAB11FIP3 MIR4717 RAB40C SNRNP25 RHOT2 CCNF SOX8 ERVK13-1 MIR3180-5 MIR3177 GNG13 RPL3L CACNA1H PDIA2 PTX4 CLCN7 NUBP2 LOC100134368 LINC00254 GFER PRSS27 FAM173A PRR35 SNORD60 LOC105371047 TELO2 FAHD1 HAGH MIR4516 ARHGDIG AMDHD2 UNKL CRAMP1 TBC1D24 HN1L METRN LOC101929280 ABCA3 STUB1 TRAF7 LOC107987233 SNORA64 NDUFB10 SSTR5-AS1 SYNGR3 MCRIP2 MRPS34 SNORA78 LUC7L LOC100287175 MAPK8IP3 NME3 LMF1 RHBDF1 MEIOB PKD1 MIR3677 TPSD1 BRICD5 SNHG9 NOXO1 NPW LOC105371184 JMJD8 MIR6768 LOC652276 LOC106660606 SNHG19 TSR3 HBQ1 FLJ42627 DNASE1L2 PDPK1 EME2 NARFL UBE2I MIR6767 ECI1 MIR3178 ATP6V0C METTL26 SLC9A3R2 PGP MIR6511B1 TPSAB1 BAIAP3 E4F1 LOC105371038 HBA2 HAGHL RNPS1 RPS2 MIR6859-4 RPL23AP5 DDX11L10 NPRL3 CCDC154 MSRB1 NTN3 AXIN1 TSC2 KCTD5 LMF1-AS1 PRR25 RAB26 NME4 HBM LOC105371049 MLST8 CASKIN1 MSLN RPUSD1 GNPTG WDR24
nsv521569 Chr.16:1971892 - 2035996 on Build GRCh38 Loss GFER NOXO1 NPW SYNGR3 TBL3 ZNF598 SLC9A3R2
dgv4858n54 Chr.16:1955562 - 2038584 on Build GRCh38 Loss GFER RPS2 SNHG9 NOXO1 SNORA64 NDUFB10 NPW SYNGR3 TBL3 SNORA10 SLC9A3R2 SNORA78 RNF151 ZNF598
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion GFER RPS2 SNHG9 NOXO1 SNORA64 NDUFB10 NPW SYNGR3 TBL3 SNORA10 MSRB1 SLC9A3R2 SNORA78 MIR4516 TSC2 MIR6511B1 MIR1225 RNF151 RPL3L LOC105371049 ZNF598 PKD1 NTHL1 HS3ST6
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion GFER RPS2 SNHG9 NOXO1 SNORA64 NDUFB10 NPW SYNGR3 TBL3 SNORA10 SLC9A3R2 SNORA78 TSC2 MIR6511B1 MIR1225 RNF151 LOC105371049 ZNF598 PKD1 NTHL1
nsv471070 Chr.16:1947613 - 2024218 on Build GRCh38 Gain GFER RPS2 SNHG9 NOXO1 SNORA64 NDUFB10 NPW SYNGR3 TBL3 SNORA10 SNORA78 RNF151 RPL3L ZNF598
dgv336n27 Chr.16:1965120 - 2038584 on Build GRCh38 Loss GFER RNF151 SNHG9 NOXO1 NPW SYNGR3 TBL3 ZNF598 SLC9A3R2 SNORA78

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