Hs00240608_cn

• Gene Symbol: NFATC2IP
• Assay Reference Genome Location: Chr.16:28964978 on build GRCh38
• Cytoband: 16p11.2

Target Gene Details

• Entrez Gene ID: 84901
• Gene Name: nuclear factor of activated T-cells 2 interacting protein
• Gene Aliases: ESC2, NIP45, RAD60
• Location: Chr.16:28950988-28967097 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFATC2IP	NM_032815.3	8	2390	NP_116204.3
	AF458593.1	8	2400	AAM49721.1
	AK027545.1	5	1805	BAB55189.1
	AK074761.1	8	2380	BAC11189.1
	AK094764.1	1	2290
	BC018311.1	6	1894
	BC068007.1	5	1630	AAH68007.1
	BC080628.1	8	2057	AAH80628.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4987n54	Chr.16:28824884 - 29032129 on Build GRCh38	Gain	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
esv3892826	Chr.16:28814728 - 29032129 on Build GRCh38	Gain+Loss	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	SH2B1 EIF3C MIR6862-2 MIR4721 RABEP2 NPIPB6 SGF29 NPIP RRN3P2 SBK1 XPO6 NPIPB9 ATP2A1 CLN3 SULT1A2 EIF3CL NFATC2IP NPIPB8 ATXN2L MIR6862-1 ATP2A1-AS1 IL27 MIR4517 APOBR LOC101928215 SULT1A1 CD19 NUPR1 SPNS1 LAT TUFM
nsv518648	Chr.16:28826194 - 29032129 on Build GRCh38	Loss	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
esv33811	Chr.16:28963694 - 28973828 on Build GRCh38	Loss	NFATC2IP
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	SH2B1 LOC107984832 EIF3C MIR6862-2 MIR4721 RABEP2 SGF29 NPIP RRN3P2 NPIPB9 ATP2A1 CLN3 SULT1A2 EIF3CL NFATC2IP NPIPB8 ATXN2L MIR6862-1 ATP2A1-AS1 IL27 MIR4517 APOBR LOC101928215 SULT1A1 CD19 NUPR1 SPNS1 LAT TUFM
dgv2831n100	Chr.16:28812594 - 29032542 on Build GRCh38	Gain	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
esv3570454	Chr.16:28799004 - 29032129 on Build GRCh38	Gain	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
nsv457480	Chr.16:28958159 - 29032129 on Build GRCh38	Gain	NFATC2IP SPNS1 LAT MIR4517
nsv571805	Chr.16:28824174 - 29032129 on Build GRCh38	Loss	SH2B1 CD19 NFATC2IP MIR4721 SPNS1 ATXN2L RABEP2 LAT ATP2A1-AS1 MIR4517 ATP2A1 TUFM
dgv2830n100	Chr.16:28620264 - 29032542 on Build GRCh38	Gain	SH2B1 EIF3C MIR6862-2 NFATC2IP MIR4721 NPIPB8 ATXN2L RABEP2 ATP2A1-AS1 MIR4517 SULT1A1 CD19 SPNS1 LAT NPIPB9 ATP2A1 TUFM

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokine production
protein sumoylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

protein tag