Hs00256964_cn

• Gene Symbol: FOXP3
• Assay Reference Genome Location: Chr.X:49255722 on build GRCh38
• Cytoband: Xp11.23

Target Gene Details

• Entrez Gene ID: 50943
• Gene Name: forkhead box P3
• Gene Aliases: AIID, DIETER, IPEX, JM2, PIDX, XPID
• Location: Chr.X:49250436-49266505 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FOXP3	NM_001114377.1			NP_001107849.1
	NM_014009.3			NP_054728.2
	XM_006724533.2			XP_006724596.2
	XM_011543916.2			XP_011542218.1
	XM_017029565.1			XP_016885054.1
	XM_017029566.1			XP_016885055.1
	XM_017029567.1			XP_016885056.1
	AF277993.1			AAG53607.1
	AJ005891.1			CAA06748.1
	AK292052.1
	AK299988.1
	BC113401.1
	BC113403.1
	BC143785.1
	BC143786.1
	DQ010327.1			AAY27088.1
	EF534714.1
	EU855812.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471602	Chr.X:49205142 - 49320261 on Build GRCh38	Gain	CACNA1F GAGE10 PPP1R3F CCDC22 FOXP3
nsv528292	Chr.X:48433286 - 49274368 on Build GRCh38	Gain	TBC1D25 KCND1 EBP ERAS LOC101927635 MAGIX PPP1R3F GLOD5 CCDC22 FTSJ1 SYP SYP-AS1 PRICKLE3 WDR13 PQBP1 GPKOW TFE3 PLP2 SLC38A5 FOXP3 GRIPAP1 TIMM17B OTUD5 PCSK1N SLC35A2 CCDC120 PORCN WAS RBM3 WDR45 PRAF2 SUV39H1 CACNA1F GATA1 PIM2 HDAC6
esv32909	Chr.X:48003374 - 49285646 on Build GRCh38	Gain+Loss	TBC1D25 KCND1 EBP SPACA5B ERAS LOC101927635 MAGIX PPP1R3F GLOD5 CCDC22 FTSJ1 ZNF182 SYP SYP-AS1 PRICKLE3 SSX4 WDR13 PQBP1 GPKOW TFE3 PLP2 SLC38A5 FOXP3 GRIPAP1 TIMM17B ZNF630 OTUD5 PCSK1N SSX4B SPACA5 SLC35A2 CCDC120 PORCN WAS RBM3 WDR45 SSX5 PRAF2 ZNF630-AS1 SUV39H1 SSX3 CACNA1F SSX9 GATA1 PIM2 SSX1 SSX6 HDAC6
nsv469734	Chr.X:49205141 - 49320261 on Build GRCh38	Gain+Loss	CACNA1F GAGE10 PPP1R3F CCDC22 FOXP3
nsv6895	Chr.X:49227319 - 49262690 on Build GRCh38	Insertion	CACNA1F CCDC22 FOXP3

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
B cell homeostasis
cytokine production
myeloid cell homeostasis
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment
T cell mediated immunity
tolerance induction to self antigen
regulation of T cell anergy
positive regulation of T cell anergy
negative regulation of chronic inflammatory response
negative regulation of T cell cytokine production
positive regulation of peripheral T cell tolerance induction
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
negative regulation of cell proliferation
response to virus
negative regulation of histone deacetylation
negative regulation of NF-kappaB transcription factor activity
negative regulation of interferon-gamma production
negative regulation of interleukin-10 production
negative regulation of interleukin-17 production
negative regulation of interleukin-2 production
negative regulation of interleukin-4 production
negative regulation of interleukin-5 production
negative regulation of interleukin-6 production
negative regulation of tumor necrosis factor production
positive regulation of interleukin-4 production
negative regulation of CREB transcription factor activity
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
positive regulation of transforming growth factor beta1 production
positive regulation of immature T cell proliferation in thymus
positive regulation of histone acetylation
negative regulation of histone acetylation
negative regulation of cytokine biosynthetic process
T cell activation
negative regulation of T cell proliferation
T cell homeostasis
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of interferon-gamma biosynthetic process
negative regulation of interleukin-2 biosynthetic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of activated T cell proliferation
negative regulation of isotype switching to IgE isotypes
regulation of isotype switching to IgG isotypes
negative regulation of cytokine secretion
negative regulation of immune response
T cell receptor signaling pathway
negative regulation of T-helper 17 cell differentiation

Function(s)

RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription corepressor activity
protein binding
histone acetyltransferase binding
protein homodimerization activity
histone deacetylase binding
sequence-specific DNA binding
metal ion binding
NF-kappaB binding
NFAT protein binding