Hs00260860_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88677999 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3	3	1396	NP_840101.1
	BC041461.1	3	1303	AAH41461.1
	BC107058.2	3	1396	AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	BX640980.1	6	3105

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	SNAI3-AS1 MVD LOC100289580 LOC339059 RNF166 CTU2 SNAI3 CYBA PIEZO1 MIR4722
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	SNAI3-AS1 MVD LOC100289580 RNF166 CTU2 SNAI3 PIEZO1 MIR4722
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	SNAI3-AS1 LOC100289580 LOC339059 RNF166 CTU2 SNAI3 PIEZO1 MIR4722
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18-AS1 SNAI3-AS1 MVD RNF166 IL17C ZC3H18 SNAI3 CYBA
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	MIR5189 SNAI3-AS1 ZFPM1 MVD LOC100289580 RNF166 CTU2 ZC3H18 SNAI3 CYBA MIR4722 ZNF469 ZC3H18-AS1 LOC107984862 LOC339059 IL17C PIEZO1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FAM157C TCF25 LOC105371419 GAS8 FANCA LOC105371414 CHMP1A RPL13 CPNE7 CBFA2T3 DBNDD1 MC1R ANKRD11 URAHP ACSF3 LOC100287036 SNORD68 TRAPPC2L SNAI3-AS1 LOC100289580 PABPN1L CENPBD1 CYBA VPS9D1 LOC101927793 PIEZO1 GALNS LOC400558 MVD SLC22A31 LOC101927817 LINC00304 LOC107984817 CTU2 SNAI3 SPIRE2 LOC100129697 GAS8-AS1 CDH15 ZNF778 AFG3L1P LOC339059 TUBB3 LOC107987238 VPS9D1-AS1 DEF8 RNF166 CDK10 APRT MIR4722 SPATA2L CDT1 ZNF276 SPATA33 DPEP1 IL17C SPG7 PRDM7 LOC105371409 TUBB8P7
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding