Genomic Map
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Target Gene Details
Entrez Gene ID: | 57707 |
Gene Name: | TBC/LysM-associated domain containing 1 |
Gene Aliases: |
KIAA1609 |
Location: |
Chr.16:84476355-84504752 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TLDC1 | NM_020947.3 | 5 | 940 | NP_065998.3 |
| XM_005256074.3 | 5 | 1010 | XP_005256131.1 | |
| XM_005256075.2 | 6 | 1138 | XP_005256132.1 | |
| XM_006721240.2 | 6 | 1093 | XP_006721303.1 | |
| XM_011523248.2 | 7 | 1237 | XP_011521550.1 | |
| XM_011523249.2 | 6 | 1088 | XP_011521551.1 | |
| XM_017023510.1 | 7 | 1257 | XP_016878999.1 | |
| XM_017023511.1 | 5 | 1012 | XP_016879000.1 | |
| XM_017023512.1 | 6 | 1180 | XP_016879001.1 | |
| AK021995.1 | 1 | 1681 | ||
| AK291237.1 | 5 | 940 | ||
| AK297241.1 | 1 | 74 | ||
| AK300132.1 | 6 | 1177 | ||
| AK310887.1 | 5 | 1016 | ||
| BC023251.1 | 4 | 872 | AAH23251.1 | |
| BC060844.1 | 5 | 927 | AAH60844.1 | |
| BI767086.1 | ||||
| BM715579.1 | 1 | 97 | ||
| BU955954.1 | 2 | 434 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv1065249 | Chr.16:84435765 - 84556540 on Build GRCh38 | Gain |
 LOC105371374
TLDC1
ATP2C2
|
| nsv1061004 | Chr.16:84405376 - 84561748 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
|
| esv3892928 | Chr.16:84339110 - 84524557 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
|
| nsv573425 | Chr.16:84298994 - 84575953 on Build GRCh38 | Loss |
LOC105371374
TLDC1
WFDC1
ATP2C2
COTL1
|
| nsv1064308 | Chr.16:84461124 - 84592674 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
COTL1
|
| esv3639429 | Chr.16:84472177 - 84518552 on Build GRCh38 | Gain |
TLDC1
|
| dgv3057n100 | Chr.16:84378422 - 84500091 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
|
| nsv483044 | Chr.16:84166395 - 87066394 on Build GRCh38 | Gain |
DNAAF1
TAF1C
LINC00311
EMC8
COX4I1
FLJ30679
TLDC1
KCNG4
LOC101928557
ZDHHC7
FENDRR
LOC440390
GSE1
ATP2C2
COTL1
FOXC2
LINC01082
LOC400548
FOXF1
LOC101928614
USP10
LOC105371374
CRISPLD2
LOC105376777
LINC00917
LOC146513
KLHL36
KIAA0513
IRF8
MTHFSD
WFDC1
LOC102724344
MIR1910
LOC101928474
GINS2
C16orf74
MIR6774
FOXC2-AS1
MIR5093
FOXL1
LINC01081
ADAD2
FAM92B
|
| nsv573454 | Chr.16:84468700 - 84512067 on Build GRCh38 | Loss |
TLDC1
|
| nsv1059640 | Chr.16:84338790 - 84543759 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
|
| dgv5262n54 | Chr.16:84381903 - 84583279 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
COTL1
|
| nsv573430 | Chr.16:84387654 - 84501190 on Build GRCh38 | Loss |
LOC105371374
TLDC1
ATP2C2
|
| nsv1058049 | Chr.16:84481312 - 84543759 on Build GRCh38 | Loss |
TLDC1
|
| dgv549e214 | Chr.16:84434443 - 84555604 on Build GRCh38 | Gain |
LOC105371374
TLDC1
ATP2C2
|
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Additional Information:
For this assay, SNP(s) [rs77677332] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
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